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SRR1747018_scaffold_15_prodigal-single.1__X__X__00402
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00402
Identity
- Kingdom:
- phage
Quality
77.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-128
Domain cluster:
rep: js4906-29-5_S40_scaffold_9_prodigal-single.1__X__X__00027__D51-117
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ameA00 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.91 | 69.0 | 7.53e-01 | 100.0% | 93.9% |
| 3frnA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.89 | 71.0 | 7.60e-01 | 100.0% | 95.6% |
| 1wvoA00 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.89 | 68.0 | 6.89e-01 | 100.0% | 79.7% |
| 2wqpA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.89 | 70.0 | 7.35e-01 | 100.0% | 89.0% |
| 3g8rA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.84 | 64.0 | 6.38e-01 | 100.0% | 77.8% |
| 1vliA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.81 | 61.0 | 6.67e-01 | 96.2% | 95.4% |
| 3lazA01 | 2.30.130.110 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › | 0.60 | 46.0 | 4.60e-01 | 100.0% | 79.7% |
| 2pptA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.58 | 28.0 | 3.85e-01 | 93.7% | 97.3% |
| 2m6pA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.51 | 28.0 | 3.45e-01 | 96.2% | 91.3% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972515 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.94 | 69.0 | 7.92e-01 | 96.2% | 100.0% |
| 3962108 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.93 | 74.0 | 7.83e-01 | 100.0% | 92.9% |
| 4268048 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.93 | 70.0 | 7.77e-01 | 98.7% | 95.4% |
| 3386541 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.92 | 72.0 | 7.89e-01 | 100.0% | 98.5% |
| 3970891 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.92 | 72.0 | 7.90e-01 | 98.7% | 98.5% |
| 3983417 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.92 | 70.0 | 7.66e-01 | 96.2% | 95.4% |
| 5078504 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.92 | 68.0 | 7.51e-01 | 100.0% | 93.8% |
| 4046971 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.91 | 71.0 | 7.80e-01 | 98.7% | 98.5% |
| 185265 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.90 | 70.0 | 7.69e-01 | 98.7% | 97.0% |
| 3393782 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.90 | 66.0 | 7.55e-01 | 97.5% | 100.0% |
| 5032882 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.90 | 70.0 | 7.56e-01 | 100.0% | 94.1% |
| 5028485 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.90 | 69.0 | 7.58e-01 | 100.0% | 96.9% |
| 1395523 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.89 | 68.0 | 7.49e-01 | 97.5% | 96.9% |
| 4942460 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.89 | 70.0 | 7.50e-01 | 100.0% | 92.8% |
| 159366 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.89 | 68.0 | 6.89e-01 | 100.0% | 79.7% |
| 1086826 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.89 | 67.0 | 7.27e-01 | 100.0% | 92.5% |
| 3587047 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.89 | 70.0 | 7.21e-01 | 100.0% | 86.5% |
| 224541 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.89 | 70.0 | 7.60e-01 | 100.0% | 95.6% |
| 4588640 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.89 | 71.0 | 7.53e-01 | 100.0% | 94.3% |
| 4409168 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.89 | 67.0 | 7.10e-01 | 98.7% | 88.6% |
| 4159528 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.88 | 69.0 | 7.34e-01 | 100.0% | 91.4% |
| 1005319 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.88 | 67.0 | 7.37e-01 | 97.5% | 96.9% |
| 3840012 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.88 | 64.0 | 7.28e-01 | 96.2% | 100.0% |
| 3388436 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.87 | 67.0 | 6.97e-01 | 100.0% | 86.3% |
| 3387261 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.85 | 62.0 | 6.40e-01 | 94.9% | 81.1% |
| 170859 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.84 | 64.0 | 6.62e-01 | 100.0% | 85.1% |
| 4678813 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.83 | 60.0 | 6.78e-01 | 97.5% | 100.0% |
| 4098701 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.82 | 65.0 | 6.73e-01 | 100.0% | 89.0% |
| 5029069 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.80 | 65.0 | 6.67e-01 | 100.0% | 90.7% |
| 3368649 | 375.1.1.201 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_20 | 0.56 | 27.0 | 3.52e-01 | 93.7% | 87.5% |
| 3172593 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.55 | 32.0 | 2.73e-01 | 73.4% | 34.6% |
| 3952159 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.54 | 33.0 | 3.44e-01 | 98.7% | 64.0% |
| 2886668 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.54 | 30.0 | 3.51e-01 | 100.0% | 82.4% |
D2
high
residues 146-276
Domain cluster:
rep: js4906-29-5_S40_scaffold_9_prodigal-single.1__X__X__00027__D128-237
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.69 | 42.0 | 4.85e-01 | 99.2% | 87.6% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.62 | 32.0 | 3.49e-01 | 99.2% | 56.8% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.61 | 21.0 | 2.82e-01 | 72.5% | 53.0% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.60 | 21.0 | 2.64e-01 | 72.5% | 44.9% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.59 | 25.0 | 3.50e-01 | 84.7% | 83.3% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 19.0 | 2.34e-01 | 100.0% | 40.2% |
| 1uenA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 31.0 | 3.22e-01 | 98.5% | 55.2% |
| 3fzzA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 33.0 | 3.45e-01 | 93.1% | 68.3% |
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.52 | 45.0 | 2.93e-01 | 96.9% | 91.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010503 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 38.0 | 4.39e-01 | 98.5% | 71.6% |
| 3929121 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 35.0 | 3.76e-01 | 93.1% | 60.0% |
| 3784604 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.63 | 42.0 | 3.92e-01 | 98.5% | 53.3% |
| 4026196 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 30.0 | 4.10e-01 | 86.3% | 95.0% |
| 3589333 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 34.0 | 3.94e-01 | 98.5% | 81.1% |
| 4021088 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.55 | 43.0 | 4.21e-01 | 97.7% | 76.2% |
| 3634241 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 30.0 | 3.73e-01 | 88.5% | 87.5% |
| 3236983 | 11.1.1.804 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 | 0.53 | 29.0 | 3.11e-01 | 97.7% | 57.4% |
| 3649432 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.53 | 33.0 | 3.12e-01 | 99.2% | 49.7% |
| 3299532 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 36.0 | 3.85e-01 | 100.0% | 82.7% |
| 1569515 | 11.1.1.248 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 | 0.51 | 33.0 | 3.72e-01 | 97.7% | 90.1% |