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SRR1747018_scaffold_15_prodigal-single.1__X__X__00405
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00405
Identity
- Kingdom:
- phage
Quality
80.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 221-330
Domain cluster:
rep: Filtrate_w_scaffold_3_prodigal-single.1__X__X__00065__D179-304
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r3pB00 | 3.40.960.10 | Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease | 0.79 | 64.0 | 6.78e-01 | 97.3% | 95.9% |
| 3odhA00 | 3.40.91.20 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.71 | 56.0 | 4.64e-01 | 84.5% | 63.4% |
| 2o14A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.68 | 61.0 | 4.93e-01 | 97.3% | 95.6% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.67 | 50.0 | 3.97e-01 | 78.2% | 63.0% |
| 3bmxA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.67 | 60.0 | 4.74e-01 | 98.2% | 65.9% |
| 6p66D01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.64 | 57.0 | 5.76e-01 | 96.4% | 96.3% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 57.0 | 5.35e-01 | 97.3% | 85.7% |
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 57.0 | 5.32e-01 | 98.2% | 87.4% |
| 6eqoA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 48.0 | 3.87e-01 | 78.2% | 66.0% |
| 2cb0A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.64 | 58.0 | 5.17e-01 | 99.1% | 73.0% |
| 7uuim01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 48.0 | 4.25e-01 | 80.0% | 93.7% |
| 2bgwB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 56.0 | 5.31e-01 | 98.2% | 90.8% |
| 4n9wA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.62 | 55.0 | 4.61e-01 | 96.4% | 83.6% |
| 2a1iA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 54.0 | 5.37e-01 | 98.2% | 90.6% |
| 4q37A00 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.62 | 53.0 | 5.24e-01 | 95.5% | 87.5% |
| 3dmyA02 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.61 | 54.0 | 5.01e-01 | 97.3% | 83.6% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 54.0 | 4.13e-01 | 98.2% | 81.3% |
| 3tbfA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.61 | 55.0 | 4.99e-01 | 100.0% | 78.5% |
| 1xv5A02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 53.0 | 4.33e-01 | 97.3% | 72.9% |
| 2yjnA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 52.0 | 4.05e-01 | 96.4% | 92.3% |
| 1t9hA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 47.0 | 4.30e-01 | 83.6% | 87.7% |
| 1onwA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.60 | 50.0 | 3.86e-01 | 93.6% | 98.9% |
| 3cs3A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 49.0 | 4.66e-01 | 96.4% | 76.6% |
| 2f62A00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 51.0 | 4.60e-01 | 97.3% | 88.6% |
| 6qu3A02 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 51.0 | 4.27e-01 | 96.4% | 78.6% |
| 2d73A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 50.0 | 3.67e-01 | 95.5% | 91.3% |
| 4oc8A02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 48.0 | 4.17e-01 | 89.1% | 72.7% |
| 1gg4A01 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.58 | 50.0 | 4.71e-01 | 94.5% | 81.6% |
| 4gx0B04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 48.0 | 4.51e-01 | 87.3% | 86.3% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.58 | 51.0 | 3.64e-01 | 100.0% | 86.9% |
| 3otiA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.58 | 50.0 | 4.03e-01 | 96.4% | 93.2% |
| 6b10A00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.57 | 48.0 | 3.46e-01 | 90.9% | 87.1% |
| 4ldpA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 51.0 | 4.45e-01 | 97.3% | 66.3% |
| 3fovA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 46.0 | 4.77e-01 | 94.5% | 94.1% |
| 3hs3A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 47.0 | 4.55e-01 | 96.4% | 78.6% |
| 3wg9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 45.0 | 4.15e-01 | 84.5% | 76.4% |
| 2x9qB00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.56 | 47.0 | 3.81e-01 | 93.6% | 87.8% |
| 3ij6A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 47.0 | 3.50e-01 | 94.5% | 96.7% |
| 3w1hA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 47.0 | 3.73e-01 | 99.1% | 63.5% |
| 3zo9A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 46.0 | 3.18e-01 | 90.9% | 74.6% |
| 3oqiA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.55 | 46.0 | 3.76e-01 | 93.6% | 94.6% |
| 3cyjA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.55 | 47.0 | 3.74e-01 | 95.5% | 87.3% |
| 4aeeA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 47.0 | 3.40e-01 | 94.5% | 81.2% |
| 2gfhA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 48.0 | 4.26e-01 | 97.3% | 86.3% |
| 2jh3A02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 4.12e-01 | 83.6% | 99.2% |
| 2iu4A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.54 | 47.0 | 4.09e-01 | 96.4% | 71.3% |
| 3zssA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 45.0 | 3.21e-01 | 91.8% | 94.0% |
| 1h0hA03 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.54 | 48.0 | 3.58e-01 | 96.4% | 69.1% |
| 3mt0A00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 48.0 | 3.59e-01 | 100.0% | 53.4% |
| 3pvsB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 3.91e-01 | 86.4% | 98.0% |
| 2vy9A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.54 | 47.0 | 4.65e-01 | 96.4% | 100.0% |
| 3lftB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 46.0 | 4.21e-01 | 94.5% | 74.1% |
| 2iw1A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 45.0 | 3.89e-01 | 97.3% | 93.5% |
| 1tezA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 42.0 | 4.07e-01 | 88.2% | 92.2% |
| 4xs5B00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.52 | 45.0 | 4.48e-01 | 97.3% | 98.2% |
| 4u63A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 43.0 | 3.64e-01 | 89.1% | 68.4% |
| 4ze8A03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 42.0 | 3.48e-01 | 91.8% | 61.4% |
| 1d4oA00 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.51 | 45.0 | 3.91e-01 | 100.0% | 84.2% |
| 2g6tA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 38.0 | 4.05e-01 | 90.9% | 90.8% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 39.0 | 3.68e-01 | 81.8% | 78.0% |
| 2cdqA01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.50 | 37.0 | 3.11e-01 | 78.2% | 87.3% |
| 5eccA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.50 | 39.0 | 3.53e-01 | 84.5% | 58.6% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5038840 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.84 | 67.0 | 7.03e-01 | 97.3% | 91.0% |
| 4940595 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.81 | 64.0 | 6.74e-01 | 96.4% | 92.0% |
| 3964655 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.80 | 66.0 | 6.69e-01 | 97.3% | 87.3% |
| 4030733 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.80 | 66.0 | 6.81e-01 | 96.4% | 92.3% |
| 4025006 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.79 | 68.0 | 4.33e-01 | 96.4% | 21.3% |
| 3163838 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.79 | 66.0 | 6.54e-01 | 97.3% | 85.2% |
| 4026799 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.78 | 67.0 | 6.59e-01 | 96.4% | 86.1% |
| 3673147 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.78 | 68.0 | 6.76e-01 | 98.2% | 88.7% |
| 4025196 | 109.4.1.315 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAP | 0.78 | 66.0 | 4.09e-01 | 96.4% | 17.5% |
| 3808239 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.77 | 65.0 | 6.82e-01 | 95.5% | 98.0% |
| 4027358 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.77 | 66.0 | 6.27e-01 | 96.4% | 79.2% |
| 4027449 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.77 | 68.0 | 6.94e-01 | 97.3% | 98.1% |
| 3964563 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.77 | 70.0 | 6.42e-01 | 97.3% | 83.6% |
| 4028756 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.77 | 62.0 | 5.45e-01 | 96.4% | 59.4% |
| 5069856 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.76 | 67.0 | 6.63e-01 | 99.1% | 89.6% |
| 5081837 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.76 | 60.0 | 6.25e-01 | 97.3% | 89.3% |
| 3979018 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.75 | 69.0 | 6.12e-01 | 97.3% | 79.3% |
| 4941226 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 65.0 | 6.19e-01 | 97.3% | 79.8% |
| 4951545 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 56.0 | 5.01e-01 | 79.1% | 64.7% |
| 3287525 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 67.0 | 6.01e-01 | 98.2% | 89.3% |
| 4997775 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 66.0 | 6.67e-01 | 97.3% | 96.4% |
| 4928387 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 56.0 | 4.89e-01 | 80.9% | 76.7% |
| 4946865 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 60.0 | 6.06e-01 | 90.0% | 100.0% |
| 4995722 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 59.0 | 6.18e-01 | 97.3% | 99.0% |
| 5056125 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.69 | 63.0 | 5.94e-01 | 97.3% | 86.9% |
| 5010842 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.69 | 60.0 | 5.32e-01 | 94.5% | 80.6% |
| 5080532 | 2008.4.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like | 0.67 | 56.0 | 5.66e-01 | 96.4% | 92.6% |
| 4935861 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 56.0 | 5.50e-01 | 96.4% | 84.2% |
| 3594690 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 60.0 | 4.78e-01 | 97.3% | 56.7% |
| 3878911 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.66 | 59.0 | 5.02e-01 | 97.3% | 92.0% |
| 5018378 | 2007.15.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase | 0.66 | 59.0 | 5.83e-01 | 97.3% | 98.3% |
| 5067597 | 2008.4.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like | 0.66 | 56.0 | 5.66e-01 | 96.4% | 93.6% |
| 4994284 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.65 | 58.0 | 4.69e-01 | 96.4% | 88.5% |
| 4982058 | 2007.9.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 | 0.65 | 59.0 | 4.74e-01 | 100.0% | 68.1% |
| 4288654 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.64 | 57.0 | 5.23e-01 | 98.2% | 88.3% |
| 4931386 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 54.0 | 5.50e-01 | 96.4% | 96.2% |
| 5068013 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.64 | 57.0 | 4.73e-01 | 97.3% | 88.9% |
| 3403539 | 7512.1.1.1 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT | 0.63 | 56.0 | 4.06e-01 | 97.3% | 87.3% |
| 5009348 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.62 | 51.0 | 5.21e-01 | 89.1% | 96.2% |
| 5014169 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 55.0 | 5.30e-01 | 100.0% | 87.8% |
| 4114333 | 2007.2.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins | 0.62 | 46.0 | 4.37e-01 | 78.2% | 74.6% |
| 3979568 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 55.0 | 4.91e-01 | 100.0% | 82.6% |
| 4974944 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.61 | 53.0 | 4.64e-01 | 97.3% | 70.6% |
| 3586967 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.61 | 54.0 | 4.32e-01 | 97.3% | 88.4% |
| 5030368 | 7512.1.1.12 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C | 0.61 | 54.0 | 4.58e-01 | 97.3% | 63.9% |
| 3597327 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 42.0 | 3.35e-01 | 72.7% | 91.6% |
| 3589928 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 52.0 | 4.70e-01 | 96.4% | 88.7% |
| 5062353 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.59 | 45.0 | 3.55e-01 | 80.9% | 77.4% |
| 4929046 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 50.0 | 4.13e-01 | 99.1% | 96.8% |
| 5055417 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.58 | 48.0 | 4.12e-01 | 89.1% | 89.7% |
| 5020661 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.58 | 48.0 | 4.07e-01 | 89.1% | 90.6% |
| 3965377 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.57 | 42.0 | 3.78e-01 | 77.3% | 71.6% |
| 3396680 | 7512.1.1.1 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT | 0.57 | 50.0 | 4.33e-01 | 97.3% | 72.9% |
| 3242035 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.56 | 44.0 | 3.25e-01 | 85.5% | 36.6% |
| 4974772 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 49.0 | 4.13e-01 | 98.2% | 95.9% |
| 2775295 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.56 | 46.0 | 4.01e-01 | 89.1% | 90.5% |
| 3232633 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.56 | 46.0 | 3.94e-01 | 91.8% | 58.9% |
| 5068117 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 45.0 | 3.75e-01 | 86.4% | 70.5% |
| 3518572 | 7512.1.1.1 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT | 0.55 | 47.0 | 2.96e-01 | 96.4% | 19.4% |
| 3959790 | 2007.1.4.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain | 0.55 | 46.0 | 3.97e-01 | 94.5% | 77.8% |
| 5057225 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.55 | 45.0 | 3.88e-01 | 88.2% | 90.0% |
| 4969542 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.54 | 39.0 | 3.54e-01 | 73.6% | 90.7% |
| 4981730 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.53 | 39.0 | 3.92e-01 | 78.2% | 84.3% |
| 3291472 | 7512.1.1.20 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › EryCIII-like_C | 0.53 | 46.0 | 3.91e-01 | 97.3% | 62.1% |
| 4038988 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.53 | 43.0 | 3.35e-01 | 88.2% | 56.7% |
| 4315670 | 2006.1.4.17 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF188 | 0.53 | 46.0 | 4.49e-01 | 97.3% | 90.4% |
| 3415022 | 7512.1.1.83 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT, EryCIII-like_C | 0.52 | 45.0 | 3.01e-01 | 97.3% | 93.6% |
| 4975086 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.51 | 42.0 | 3.60e-01 | 89.1% | 91.1% |
| 1683959 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.51 | 42.0 | 3.47e-01 | 91.8% | 61.4% |
| 4809977 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.50 | 38.0 | 3.68e-01 | 92.7% | 71.9% |
D2
medium
residues 149-215
Domain cluster:
rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14311.13 best | DUF4379 | 37.3 | 3.50e-09 | 76.1% | 94.6% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6nhiA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.60 | 46.0 | 4.32e-01 | 83.6% | 82.1% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.60 | 51.0 | 4.44e-01 | 95.5% | 74.0% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.59 | 49.0 | 4.30e-01 | 91.0% | 73.3% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.59 | 50.0 | 4.11e-01 | 95.5% | 64.2% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.57 | 38.0 | 4.27e-01 | 82.1% | 88.5% |
| 1adjB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.57 | 48.0 | 4.31e-01 | 95.5% | 78.7% |
| 1httA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 46.0 | 4.10e-01 | 94.0% | 78.6% |
| 3rauA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.55 | 39.0 | 2.51e-01 | 77.6% | 43.0% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 36.0 | 3.86e-01 | 89.6% | 80.7% |
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 38.0 | 3.51e-01 | 73.1% | 70.0% |
| 5e3iA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 45.0 | 4.02e-01 | 95.5% | 80.8% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 3.89e-01 | 88.1% | 72.6% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.52 | 34.0 | 2.52e-01 | 76.1% | 24.1% |
| 3i3lA02 | 3.30.390.160 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.51 | 36.0 | 3.00e-01 | 74.6% | 92.8% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 40.0 | 3.95e-01 | 86.6% | 93.1% |
| 3d8dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 38.0 | 3.10e-01 | 85.1% | 82.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712524 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.85 | 58.0 | 6.29e-01 | 70.1% | 92.7% |
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.82 | 76.0 | 6.14e-01 | 100.0% | 55.8% |
| 3598807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 70.0 | 6.98e-01 | 94.0% | 89.9% |
| 3605531 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.79 | 72.0 | 6.69e-01 | 100.0% | 79.8% |
| 5005811 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.68 | 36.0 | 3.38e-01 | 77.6% | 41.2% |
| 3620947 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 40.0 | 4.37e-01 | 70.1% | 76.4% |
| 4562754 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.64 | 52.0 | 4.59e-01 | 91.0% | 80.0% |
| 3553625 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.61 | 40.0 | 4.32e-01 | 76.1% | 81.8% |
| 3267419 | 601.51.1.7 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › DUF4460 | 0.61 | 46.0 | 3.56e-01 | 83.6% | 77.6% |
| 4959548 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.60 | 49.0 | 4.39e-01 | 89.6% | 77.7% |
| 4940298 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.60 | 48.0 | 4.39e-01 | 89.6% | 80.0% |
| 4279058 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.57 | 48.0 | 4.37e-01 | 95.5% | 81.1% |
| 4297095 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.56 | 47.0 | 4.14e-01 | 95.5% | 73.3% |
| 4036822 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.56 | 43.0 | 4.02e-01 | 83.6% | 76.5% |
| 4381486 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.56 | 44.0 | 4.11e-01 | 89.6% | 81.8% |
| 4468497 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.56 | 40.0 | 3.45e-01 | 76.1% | 94.3% |
| None | — | 0.54 | 38.0 | 2.50e-01 | 76.1% | 83.1% | |
| 3929043 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.54 | 34.0 | 2.57e-01 | 77.6% | 24.6% |
| 3843756 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.53 | 39.0 | 3.50e-01 | 77.6% | 60.0% |
| 3496659 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 4.33e-01 | 88.1% | 91.7% |
| 3604686 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 3.36e-01 | 79.1% | 72.4% |
| 4979113 | 620.1.1.6 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 | 0.52 | 42.0 | 3.32e-01 | 91.0% | 84.3% |
| 3925731 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.52 | 35.0 | 2.55e-01 | 76.1% | 24.9% |
| 3784426 | 11.2.1.78 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_DCK_4th | 0.52 | 44.0 | 3.50e-01 | 100.0% | 92.0% |
| 3398093 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.52 | 39.0 | 4.13e-01 | 86.6% | 90.0% |
| 3680858 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.52 | 37.0 | 2.80e-01 | 76.1% | 49.7% |
| 3969312 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.51 | 34.0 | 3.44e-01 | 77.6% | 67.1% |
| 3269923 | 101.1.21.1 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N | 0.51 | 40.0 | 2.94e-01 | 95.5% | 81.7% |
| 3205853 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.51 | 35.0 | 3.23e-01 | 74.6% | 91.6% |
D3
medium
residues 331-413
Domain cluster:
rep: SRR1747052_scaffold_19_prodigal-single.1__X__X__00173__D11-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14311.13 best | DUF4379 | 39.0 | 1.00e-09 | 61.5% | 83.9% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g5hB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.57 | 42.0 | 3.91e-01 | 79.5% | 81.3% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 41.0 | 3.87e-01 | 79.5% | 80.8% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 31.0 | 3.53e-01 | 75.9% | 77.2% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 40.0 | 3.55e-01 | 79.5% | 69.1% |
| 3netB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 40.0 | 3.83e-01 | 79.5% | 83.7% |
| 1adjB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 39.0 | 3.80e-01 | 78.3% | 86.2% |
| 1qe0A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 38.0 | 3.77e-01 | 77.1% | 87.9% |
| 6nhiA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 37.0 | 3.77e-01 | 74.7% | 91.7% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.52 | 38.0 | 3.63e-01 | 78.3% | 81.2% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.51 | 33.0 | 2.96e-01 | 77.1% | 45.5% |
| 1x6gA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 37.0 | 3.82e-01 | 78.3% | 85.2% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 34.0 | 2.88e-01 | 71.1% | 43.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.81 | 58.0 | 5.06e-01 | 74.7% | 52.5% |
| 3605531 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.80 | 58.0 | 5.77e-01 | 74.7% | 76.2% |
| 4946165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 33.0 | 3.93e-01 | 73.5% | 90.9% |
| 4975150 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 35.0 | 3.93e-01 | 73.5% | 86.7% |
| 4980648 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 34.0 | 3.72e-01 | 73.5% | 74.3% |
| 4112874 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 39.0 | 3.50e-01 | 78.3% | 64.8% |
| 4136172 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 40.0 | 3.87e-01 | 79.5% | 88.4% |
| 4082349 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 40.0 | 3.67e-01 | 79.5% | 75.5% |
| 4122293 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 39.0 | 3.72e-01 | 78.3% | 85.0% |
| 3577505 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 34.0 | 3.43e-01 | 71.1% | 63.5% |
| 3671986 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.53 | 34.0 | 3.73e-01 | 71.1% | 77.1% |
| 5060760 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.53 | 33.0 | 3.64e-01 | 74.7% | 80.0% |
| 4145391 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.53 | 37.0 | 4.23e-01 | 72.3% | 100.0% |
| 4959548 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.53 | 39.0 | 3.76e-01 | 78.3% | 84.0% |
| 4489788 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.53 | 38.0 | 3.65e-01 | 78.3% | 84.0% |
| 4121236 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.53 | 39.0 | 3.82e-01 | 78.3% | 87.6% |
| 4928458 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.52 | 39.0 | 3.81e-01 | 79.5% | 90.0% |
| 4015071 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 34.0 | 3.69e-01 | 73.5% | 78.6% |
| 4602539 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.52 | 36.0 | 4.12e-01 | 74.7% | 96.8% |
| 3535278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 34.0 | 3.99e-01 | 73.5% | 95.0% |
| 3514631 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.51 | 39.0 | 3.50e-01 | 84.3% | 83.9% |
| 3931905 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 36.0 | 3.27e-01 | 74.7% | 77.4% |
| 3744118 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.50 | 37.0 | 3.65e-01 | 79.5% | 90.0% |
| 4011604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.50 | 34.0 | 3.59e-01 | 73.5% | 77.3% |
D4
medium
residues 414-500
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14311.13 best | DUF4379 | 27.8 | 3.30e-06 | 70.1% | 91.1% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q5iA03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.56 | 44.0 | 3.96e-01 | 83.9% | 79.3% |
| 1qe0A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.56 | 39.0 | 3.91e-01 | 72.4% | 85.7% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.56 | 40.0 | 3.79e-01 | 74.7% | 79.2% |
| 1wu7A03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 43.0 | 4.20e-01 | 83.9% | 86.6% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.55 | 30.0 | 3.83e-01 | 72.4% | 88.9% |
| 1adjB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 41.0 | 4.08e-01 | 83.9% | 83.0% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 42.0 | 3.77e-01 | 85.1% | 69.9% |
| 5e3iA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 42.0 | 4.01e-01 | 83.9% | 84.8% |
| 3c8uA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.95e-01 | 77.0% | 51.0% |
| 1httA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.52 | 42.0 | 4.10e-01 | 87.4% | 83.7% |
| 5owvD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 34.0 | 2.56e-01 | 86.2% | 26.1% |
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.51 | 28.0 | 3.34e-01 | 77.0% | 80.0% |
| 1g5hB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 40.0 | 3.81e-01 | 85.1% | 84.1% |
| 2wj9B00 | 3.30.70.3580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein | 0.51 | 44.0 | 3.68e-01 | 93.1% | 85.5% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 43.0 | 4.03e-01 | 90.8% | 80.8% |
| 3netB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 42.0 | 4.03e-01 | 88.5% | 83.7% |
| 3wt0A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 34.0 | 2.87e-01 | 70.1% | 53.8% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 37.0 | 2.53e-01 | 78.2% | 72.0% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.50 | 35.0 | 3.24e-01 | 72.4% | 89.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3598807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 60.0 | 6.66e-01 | 82.8% | 100.0% |
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.77 | 59.0 | 5.24e-01 | 80.5% | 88.3% |
| 3605531 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.74 | 61.0 | 6.20e-01 | 96.6% | 90.5% |
| 3594031 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 34.0 | 4.19e-01 | 88.5% | 78.2% |
| 4947286 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.60 | 45.0 | 4.08e-01 | 78.2% | 74.8% |
| 4946165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 36.0 | 4.38e-01 | 85.1% | 100.0% |
| 4928458 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 41.0 | 4.07e-01 | 73.6% | 86.7% |
| 4122293 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 44.0 | 4.27e-01 | 82.8% | 87.0% |
| 3566431 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.57 | 37.0 | 4.23e-01 | 95.4% | 98.3% |
| 4952887 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 33.0 | 3.94e-01 | 80.5% | 90.9% |
| 4056471 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.56 | 42.0 | 4.37e-01 | 89.7% | 86.3% |
| 4982300 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.56 | 39.0 | 3.90e-01 | 72.4% | 85.6% |
| 4327535 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.55 | 41.0 | 4.29e-01 | 85.1% | 86.3% |
| 4474374 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 42.0 | 4.09e-01 | 83.9% | 82.1% |
| 3452604 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 38.0 | 3.76e-01 | 83.9% | 69.5% |
| 4069569 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.53 | 42.0 | 4.09e-01 | 86.2% | 82.8% |
| 4990212 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 31.0 | 3.71e-01 | 80.5% | 90.9% |
| 3400769 | 4099.1.1.21 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › RM3_Med14 | 0.53 | 44.0 | 3.55e-01 | 95.4% | 96.8% |
| 5060760 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.53 | 36.0 | 3.95e-01 | 93.1% | 93.8% |
| 4240279 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.53 | 42.0 | 3.81e-01 | 85.1% | 76.5% |
| 4038226 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.53 | 43.0 | 4.11e-01 | 88.5% | 82.0% |
| 4136172 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.53 | 42.0 | 4.10e-01 | 86.2% | 87.4% |
| 3514631 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.53 | 39.0 | 3.56e-01 | 81.6% | 84.7% |
| 2321841 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.52 | 37.0 | 3.23e-01 | 74.7% | 70.4% |
| 2321219 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.52 | 36.0 | 3.23e-01 | 73.6% | 65.7% |
| 4336817 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.52 | 41.0 | 4.06e-01 | 87.4% | 85.3% |
| 4370920 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.51 | 41.0 | 3.99e-01 | 88.5% | 80.0% |
| 3839929 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.50 | 35.0 | 3.95e-01 | 79.3% | 98.4% |