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SRR1747018_scaffold_15_prodigal-single.1__X__X__00442

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00442

Identity

Kingdom:
phage

Quality

77.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-173
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00442__D189-310
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j3eA00 1.20.1380.10 Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain 0.74 52.0 5.76e-01 72.7% 95.7%
2bkoA02 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.61 27.0 3.66e-01 92.3% 76.5%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 33.0 4.16e-01 93.7% 91.8%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 37.0 3.41e-01 92.3% 51.1%
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.56 32.0 3.94e-01 77.6% 96.2%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.50 32.0 3.73e-01 79.0% 93.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
134666 110.2.1.1 ↗ alpha arrays › DEATH domain › Replication modulator SeqA-C › Replication modulator SeqA-C › SeqA 0.74 52.0 5.59e-01 72.7% 90.2%
3838348 110.2.1.0 ↗ alpha arrays › DEATH domain › Replication modulator SeqA-C › Replication modulator SeqA-C 0.73 56.0 6.15e-01 86.0% 100.0%
1389176 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.59 29.0 3.89e-01 72.7% 91.5%
3924886 109.4.1.1452 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_Maestro_2 0.55 41.0 2.57e-01 76.9% 31.0%
4309134 304.11.1.2 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.54 28.0 3.62e-01 74.1% 90.7%
3966305 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.54 28.0 3.74e-01 72.7% 94.7%
4241417 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.51 37.0 3.11e-01 92.3% 45.1%
3617244 109.4.1.839 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.51 37.0 2.79e-01 75.5% 70.1%
D2 high residues 189-310
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j3eA00 1.20.1380.10 Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain 0.75 57.0 5.87e-01 79.5% 96.5%
4xttA00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.63 31.0 3.70e-01 100.0% 68.2%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.56e-01 85.2% 100.0%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 32.0 4.03e-01 98.4% 100.0%
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.55 25.0 3.21e-01 90.2% 76.2%
1hi9A02 3.30.1360.130 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein 0.55 33.0 3.94e-01 72.1% 94.7%
4r5zA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 36.0 3.62e-01 81.1% 65.1%
3f56A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.54 40.0 4.23e-01 76.2% 95.3%
1x4dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 36.0 3.85e-01 95.1% 81.4%
3fkdA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 35.0 3.68e-01 80.3% 80.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3690288 109.4.1.2628 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, TOR1L1_N, TPR_IMB1, TPR_IPO5 0.63 43.0 2.53e-01 70.5% 18.3%
5042027 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.58 34.0 2.62e-01 100.0% 25.4%
3715083 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.57 34.0 2.53e-01 91.0% 22.5%
3219629 109.4.1.2417 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Importin_rep_6, TPR_IPO5 0.55 38.0 2.59e-01 72.1% 39.1%
3890165 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.54 45.0 3.77e-01 100.0% 52.1%
3983510 219.1.1.152 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF26124 0.54 42.0 3.86e-01 98.4% 63.0%
3585621 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 42.0 3.60e-01 86.9% 97.0%
3734422 109.4.1.2516 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Importin_rep_4, Importin_rep_5, Importin_rep_6, TPR_IPO5 0.51 35.0 2.17e-01 70.5% 22.0%