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SRR1747018_scaffold_15_prodigal-single.1__X__X__00453
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00453
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-93_118-132
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5vbfA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 46.0 | 3.38e-01 | 100.0% | 50.0% |
| 1u5uA00 | 2.40.180.10 | Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain | 0.52 | 40.0 | 2.67e-01 | 81.5% | 81.4% |
| 3hy3A00 | 3.40.50.10420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like | 0.52 | 38.0 | 3.07e-01 | 79.3% | 44.9% |
| 1y8qB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 3.28e-01 | 92.4% | 94.1% |
| 6yiiA02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 41.0 | 3.13e-01 | 85.9% | 79.9% |
| 2g0iA00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.51 | 41.0 | 3.80e-01 | 83.7% | 83.8% |
| 3s6sB00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.51 | 41.0 | 3.33e-01 | 87.0% | 79.4% |
| 4jz6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.50 | 46.0 | 3.34e-01 | 100.0% | 74.3% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 43.0 | 3.12e-01 | 97.8% | 84.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010296 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.66 | 52.0 | 4.21e-01 | 85.9% | 45.3% |
| 3627709 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 47.0 | 3.83e-01 | 82.6% | 88.5% |
| 4015596 | 3873.1.1.0 ↗ | a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain | 0.57 | 36.0 | 3.29e-01 | 93.5% | 47.5% |
| 3875765 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 48.0 | 3.36e-01 | 95.7% | 76.1% |
| 3234686 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.57 | 49.0 | 3.36e-01 | 95.7% | 71.8% |
| 4490186 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 48.0 | 3.29e-01 | 95.7% | 69.9% |
| 3448051 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 42.0 | 3.16e-01 | 83.7% | 78.0% |
| 3965660 | 223.1.1.110 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30364 | 0.54 | 42.0 | 3.64e-01 | 81.5% | 70.0% |
| 4880634 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.54 | 33.0 | 3.90e-01 | 82.6% | 93.2% |
| 2061471 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.54 | 46.0 | 3.50e-01 | 100.0% | 56.9% |
| 3937147 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.54 | 45.0 | 3.04e-01 | 92.4% | 81.8% |
| 3506749 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.54 | 38.0 | 3.17e-01 | 73.9% | 89.7% |
| 3497696 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 46.0 | 3.16e-01 | 95.7% | 72.2% |
| 3924659 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 45.0 | 3.12e-01 | 92.4% | 84.7% |
| 3847017 | 3704.1.1.0 ↗ | alpha superhelices › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain | 0.52 | 39.0 | 3.10e-01 | 79.3% | 47.9% |
| 3249245 | 5000.4.1.0 ↗ | alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain | 0.51 | 45.0 | 3.31e-01 | 98.9% | 68.2% |
| 4992192 | 192.20.1.0 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD | 0.50 | 44.0 | 4.42e-01 | 96.7% | 93.7% |
| 3489463 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.50 | 42.0 | 2.92e-01 | 100.0% | 59.7% |
D2
medium
residues 94-117_133-192
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oo0B00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.60 | 44.0 | 3.35e-01 | 77.4% | 65.2% |
| 3u02A01 | 3.30.70.2200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 46.0 | 3.86e-01 | 82.1% | 86.8% |
| 1ce7A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.57 | 39.0 | 3.20e-01 | 70.2% | 92.6% |
| 1svbA01 | 2.60.98.10 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 | 0.57 | 39.0 | 3.30e-01 | 84.5% | 43.4% |
| 2v3jA01 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.56 | 42.0 | 3.23e-01 | 81.0% | 56.6% |
| 7mhuA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 41.0 | 2.74e-01 | 82.1% | 67.2% |
| 5bulA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 42.0 | 2.81e-01 | 89.3% | 77.3% |
| 2debA03 | 3.30.559.70 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 | 0.52 | 42.0 | 2.90e-01 | 86.9% | 70.9% |
| 3ctkA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.52 | 35.0 | 2.90e-01 | 71.4% | 93.4% |
| 3czbA02 | 2.40.240.50 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases | 0.52 | 37.0 | 3.11e-01 | 77.4% | 96.8% |
| 3r2gA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 36.0 | 2.47e-01 | 75.0% | 61.9% |
| 3ljsA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 38.0 | 2.69e-01 | 84.5% | 90.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1167962 | 3351.2.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › ORF273 protein from Acidianus two-tailed virus › ORF273 protein from Acidianus two-tailed virus › ATV_ORF273 | 0.67 | 57.0 | 4.21e-01 | 97.6% | 75.5% |
| 5000793 | 2488.1.1.7 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 | 0.60 | 46.0 | 3.40e-01 | 83.3% | 60.9% |
| 4984977 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.59 | 45.0 | 3.77e-01 | 84.5% | 87.7% |
| 4945789 | 304.48.1.110 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS_FLD | 0.58 | 45.0 | 3.75e-01 | 85.7% | 85.0% |
| 3660535 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.58 | 50.0 | 3.25e-01 | 98.8% | 39.8% |
| 3692925 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.56 | 49.0 | 3.98e-01 | 96.4% | 82.6% |
| 3426108 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.56 | 43.0 | 2.87e-01 | 82.1% | 51.5% |
| 5041316 | 5.1.4.664 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_2 | 0.55 | 41.0 | 2.72e-01 | 81.0% | 74.0% |
| 3290053 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.54 | 41.0 | 2.80e-01 | 83.3% | 72.6% |
| 3269433 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.53 | 43.0 | 2.83e-01 | 91.7% | 83.1% |
| 4991115 | 2488.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot | 0.53 | 41.0 | 3.25e-01 | 82.1% | 47.2% |
| 9524 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.53 | 36.0 | 2.50e-01 | 72.6% | 29.1% |
| 1153496 | 239.1.1.4 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › MltA | 0.52 | 37.0 | 3.13e-01 | 77.4% | 96.2% |
| 4234640 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 45.0 | 3.39e-01 | 100.0% | 65.3% |
| 4461627 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 46.0 | 3.97e-01 | 98.8% | 76.9% |
| 3500851 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.51 | 40.0 | 2.83e-01 | 90.5% | 32.6% |
| 4405362 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.51 | 42.0 | 3.14e-01 | 98.8% | 60.8% |
| 3452406 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.51 | 36.0 | 3.37e-01 | 75.0% | 76.4% |
| 5071885 | 5090.2.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain | 0.51 | 40.0 | 3.33e-01 | 92.9% | 50.0% |
| 3236415 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.51 | 40.0 | 2.86e-01 | 90.5% | 35.3% |
| 4106500 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.50 | 42.0 | 3.08e-01 | 100.0% | 54.5% |
| 5041685 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 43.0 | 3.14e-01 | 100.0% | 71.8% |