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SRR1747018_scaffold_15_prodigal-single.1__X__X__00454
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00454
Identity
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 48-99
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l37A00 | 6.10.250.890 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 41.0 | 4.55e-01 | 73.1% | 67.4% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.72 | 57.0 | 4.43e-01 | 100.0% | 38.4% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.69 | 54.0 | 4.28e-01 | 100.0% | 41.1% |
| 1pn9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 54.0 | 4.11e-01 | 100.0% | 36.2% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.67 | 56.0 | 4.78e-01 | 94.2% | 84.9% |
| 2k9pA00 | 1.10.287.920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pheromone alpha factor receptor. | 0.67 | 57.0 | 5.05e-01 | 100.0% | 71.2% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.63 | 55.0 | 4.29e-01 | 98.1% | 87.7% |
| 3gaaB00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.63 | 51.0 | 3.29e-01 | 88.5% | 89.3% |
| 3oo3A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.62 | 49.0 | 2.93e-01 | 86.5% | 43.9% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 50.0 | 4.48e-01 | 100.0% | 67.9% |
| 1cw1A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.58 | 47.0 | 2.81e-01 | 92.3% | 60.7% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.57 | 51.0 | 4.18e-01 | 100.0% | 91.6% |
| 7d5qA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 45.0 | 3.25e-01 | 100.0% | 64.8% |
| 1af7A01 | 1.10.155.10 | Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0.51 | 35.0 | 3.20e-01 | 86.5% | 50.0% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.51 | 38.0 | 3.07e-01 | 80.8% | 52.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943264 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.76 | 55.0 | 4.85e-01 | 88.5% | 53.3% |
| 3746144 | 192.29.1.273 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NICE-3 | 0.72 | 54.0 | 5.01e-01 | 98.1% | 64.6% |
| 4989157 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.71 | 54.0 | 4.38e-01 | 100.0% | 43.0% |
| None | — | 0.69 | 56.0 | 3.72e-01 | 100.0% | 22.4% | |
| 5041191 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 45.0 | 4.60e-01 | 75.0% | 70.0% |
| 3680264 | 109.4.1.1295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 | 0.69 | 53.0 | 3.18e-01 | 84.6% | 11.6% |
| 3395965 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.68 | 49.0 | 4.87e-01 | 100.0% | 72.7% |
| 3364222 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.67 | 51.0 | 2.92e-01 | 84.6% | 8.2% |
| 3296486 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.66 | 54.0 | 3.08e-01 | 90.4% | 15.2% |
| 3655236 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.66 | 51.0 | 4.18e-01 | 84.6% | 46.3% |
| 4947713 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.66 | 50.0 | 3.90e-01 | 94.2% | 39.1% |
| 4956279 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.65 | 54.0 | 4.06e-01 | 96.2% | 80.0% |
| 3475770 | 5069.1.1.38 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Frag1 | 0.65 | 52.0 | 3.69e-01 | 100.0% | 27.6% |
| 3227959 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.65 | 57.0 | 4.20e-01 | 100.0% | 62.9% |
| 4947726 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.65 | 53.0 | 4.44e-01 | 100.0% | 52.2% |
| 4169130 | 102.1.1.5 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY | 0.64 | 52.0 | 4.33e-01 | 88.5% | 93.3% |
| 2755627 | 192.26.1.1 ↗ | alpha bundles › Long alpha-hairpin › Mitoribosomal protein mL51 › Mitoribosomal protein mL51 › MRP-L51 | 0.64 | 49.0 | 3.97e-01 | 98.1% | 44.3% |
| 4127368 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.64 | 48.0 | 4.91e-01 | 100.0% | 84.0% |
| 4390324 | 5059.1.1.2 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Multi_Drug_Res | 0.62 | 50.0 | 3.94e-01 | 96.2% | 43.3% |
| 4078998 | 5059.1.1.2 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Multi_Drug_Res | 0.61 | 49.0 | 3.96e-01 | 100.0% | 45.7% |
| 5055469 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.61 | 51.0 | 4.05e-01 | 100.0% | 45.5% |
| 3972078 | 5059.1.1.13 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › DMT_6 | 0.60 | 49.0 | 3.90e-01 | 94.2% | 53.1% |
| 4195041 | 4090.1.1.1 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like | 0.59 | 54.0 | 3.83e-01 | 100.0% | 53.3% |
| 4957468 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.59 | 51.0 | 4.07e-01 | 100.0% | 48.2% |
| 5055460 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.59 | 49.0 | 3.11e-01 | 100.0% | 17.8% |
| 3225449 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.59 | 43.0 | 3.81e-01 | 76.9% | 86.7% |
| 5028352 | 103.4.1.30 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28863 | 0.59 | 45.0 | 3.73e-01 | 80.8% | 49.4% |
| 3935938 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.58 | 39.0 | 3.09e-01 | 75.0% | 31.3% |
| 4971760 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.58 | 48.0 | 3.55e-01 | 100.0% | 55.7% |
| 5069130 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.58 | 41.0 | 4.25e-01 | 80.8% | 78.0% |
| 3305981 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.57 | 47.0 | 3.01e-01 | 100.0% | 25.9% |
| 4599610 | 102.1.1.5 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY | 0.56 | 49.0 | 4.08e-01 | 100.0% | 83.2% |
| 3200565 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 28.0 | 3.17e-01 | 84.6% | 72.5% |