Back to structures

SRR1747018_scaffold_15_prodigal-single.1__X__X__00455

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00455

Identity

Kingdom:
phage

Quality

83.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-72
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h6uA00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.75 51.0 4.16e-01 70.3% 43.9%
1wfuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 48.0 4.19e-01 70.3% 48.4%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.70 47.0 4.12e-01 70.3% 54.2%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.69 53.0 4.10e-01 85.9% 55.3%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 46.0 3.81e-01 70.3% 60.9%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 45.0 4.13e-01 70.3% 54.1%
2esvE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 45.0 3.75e-01 70.3% 61.3%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 44.0 3.43e-01 71.9% 39.4%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 43.0 3.63e-01 70.3% 62.5%
2pttB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.69e-01 70.3% 61.1%
1hxmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 43.0 3.47e-01 70.3% 53.7%
5ynrA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 50.0 3.94e-01 89.1% 44.2%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.62 48.0 3.89e-01 87.5% 53.4%
3l5hA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 40.0 3.76e-01 70.3% 53.8%
4kg8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.62 47.0 3.70e-01 81.2% 78.3%
7tzeA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 41.0 3.49e-01 70.3% 62.4%
6tr4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 43.0 3.42e-01 75.0% 57.3%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 41.0 3.13e-01 71.9% 39.4%
1axiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.53e-01 70.3% 45.5%
4bfkA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.60 45.0 3.59e-01 79.7% 86.3%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 40.0 3.58e-01 70.3% 54.7%
5e53A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 3.56e-01 70.3% 53.8%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 40.0 3.44e-01 70.3% 51.9%
3ci6B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 44.0 3.34e-01 82.8% 64.8%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.19e-01 70.3% 43.4%
5y4mA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 43.0 3.31e-01 81.2% 77.3%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 46.0 4.15e-01 95.3% 92.6%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 43.0 3.46e-01 85.9% 62.6%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 38.0 3.40e-01 70.3% 61.2%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 42.0 3.38e-01 85.9% 53.7%
3shrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 40.0 3.18e-01 76.6% 48.9%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.55 37.0 2.93e-01 70.3% 68.1%
3lurA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.55 44.0 3.41e-01 93.8% 78.5%
2e4tA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 41.0 3.38e-01 82.8% 86.0%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 39.0 3.02e-01 82.8% 68.0%
5xbtA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.54 43.0 3.46e-01 95.3% 81.6%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.53 44.0 3.63e-01 93.8% 84.3%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 43.0 4.29e-01 100.0% 90.9%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 45.0 3.45e-01 100.0% 92.1%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.26e-01 70.3% 58.0%
1fscA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 39.0 4.00e-01 100.0% 86.9%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 43.0 3.42e-01 100.0% 57.1%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 38.0 3.45e-01 81.2% 82.5%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.52 42.0 3.15e-01 93.8% 67.0%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 3.00e-01 81.2% 81.0%
2vjwA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 38.0 3.16e-01 85.9% 74.6%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 45.0 4.36e-01 98.4% 85.1%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.51 42.0 3.12e-01 95.3% 65.8%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237938 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.69 49.0 4.02e-01 75.0% 59.1%
3749628 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.69 47.0 4.43e-01 70.3% 60.0%
3898135 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.68 52.0 3.67e-01 81.2% 59.5%
3226640 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 46.0 4.00e-01 71.9% 57.6%
5051674 11.1.1.471 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Kre9_KNH 0.67 45.0 3.98e-01 70.3% 52.6%
3996013 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 45.0 3.96e-01 70.3% 54.7%
3533957 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.67 47.0 3.61e-01 75.0% 57.2%
3672250 207.1.1.116 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.65 50.0 3.65e-01 85.9% 35.8%
3211308 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 44.0 3.85e-01 70.3% 49.5%
3627415 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.64 51.0 3.95e-01 87.5% 49.0%
3239399 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 46.0 3.39e-01 75.0% 48.8%
3488516 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.64 43.0 3.69e-01 70.3% 44.8%
4661047 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.64 49.0 3.28e-01 85.9% 39.8%
3398883 10.32.1.28 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.64 45.0 3.28e-01 75.0% 49.7%
4942891 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 3.64e-01 70.3% 52.4%
3338287 221.1.1.166 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.63 42.0 4.28e-01 70.3% 69.2%
3406956 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.63 49.0 3.96e-01 87.5% 52.6%
3473993 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.62 42.0 3.41e-01 70.3% 36.8%
3837960 11.1.1.840 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_SaeA_2nd 0.62 42.0 3.74e-01 70.3% 51.1%
3582491 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.62 46.0 3.48e-01 79.7% 56.0%
4964831 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.62 47.0 3.45e-01 84.4% 64.4%
4942270 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 3.72e-01 70.3% 51.1%
3748555 10.32.1.216 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.61 45.0 3.74e-01 79.7% 78.3%
3405565 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.61 42.0 3.79e-01 75.0% 87.4%
3783236 3519.1.1.1 beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.61 41.0 3.29e-01 70.3% 90.0%
3388550 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 40.0 3.58e-01 70.3% 49.5%
4518176 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 40.0 3.20e-01 70.3% 40.0%
3762030 219.1.1.14 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.59 50.0 4.15e-01 100.0% 89.6%
3472961 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 44.0 3.42e-01 82.8% 64.7%
3909296 11.1.1.896 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3, I-set 0.58 39.0 2.63e-01 70.3% 18.1%
4950594 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.58 39.0 2.51e-01 70.3% 33.2%
3940525 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 42.0 3.10e-01 81.2% 69.0%
4011256 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.58 46.0 3.22e-01 95.3% 63.5%
3797654 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 41.0 3.24e-01 76.6% 50.4%
4338821 221.1.1.69 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM 0.57 42.0 3.66e-01 81.2% 76.2%
3626445 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.57 47.0 4.17e-01 93.8% 73.7%
4945034 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.57 43.0 3.19e-01 84.4% 66.1%
3472014 1.1.1.1 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.57 46.0 2.94e-01 95.3% 96.5%
3953880 223.1.1.161 a+b three layers › Profilin-like › sensor domains › sensor domains › DUF4118 0.56 38.0 2.54e-01 70.3% 21.3%
3789408 10.32.1.11 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › ANAPC10 0.55 43.0 3.19e-01 89.1% 98.4%
3952812 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 46.0 4.12e-01 93.8% 97.8%
3936822 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 44.0 4.36e-01 100.0% 85.7%
4939879 315.1.1.15 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › DUF5402 0.55 43.0 3.68e-01 92.2% 93.3%
4958989 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.55 37.0 2.89e-01 70.3% 35.5%
4960214 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.55 37.0 2.85e-01 70.3% 40.6%
4219489 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.54 44.0 3.03e-01 98.4% 62.2%
5002722 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.53 39.0 2.98e-01 81.2% 62.9%
4012572 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.52 43.0 3.30e-01 98.4% 67.1%
3406765 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 37.0 3.36e-01 78.1% 94.7%
4890356 382.1.1.2 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.51 41.0 4.00e-01 98.4% 92.1%
3575366 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 37.0 3.33e-01 79.7% 83.2%
3390562 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 42.0 4.12e-01 95.3% 88.6%
3235704 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 43.0 4.02e-01 100.0% 83.3%