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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00005
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00005
Identity
- Kingdom:
- phage
Quality
91.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-111
Domain cluster:
rep: NC_042033.1__YP_009614284.1__FDI62_gp59__00059__D50-148
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14190.12 best | DUF4313 | 34.7 | 2.20e-08 | 85.3% | 71.2% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 32.0 | 4.03e-01 | 71.6% | 90.3% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 32.0 | 3.93e-01 | 71.6% | 87.3% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.57 | 32.0 | 3.41e-01 | 99.1% | 60.9% |
| 7q5yB01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.55 | 36.0 | 3.55e-01 | 89.9% | 60.8% |
| 2w20B01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.55 | 49.0 | 3.36e-01 | 100.0% | 47.0% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.55 | 32.0 | 3.79e-01 | 89.9% | 88.7% |
| 4ffgA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 48.0 | 3.48e-01 | 100.0% | 58.6% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.54 | 42.0 | 3.73e-01 | 84.4% | 74.5% |
| 4emoC00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 42.0 | 4.12e-01 | 93.6% | 79.3% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 45.0 | 3.28e-01 | 99.1% | 78.4% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.52 | 37.0 | 3.50e-01 | 92.7% | 59.3% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.52 | 29.0 | 2.89e-01 | 71.6% | 50.9% |
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 37.0 | 3.19e-01 | 95.4% | 44.1% |
| 5hx0A00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.50 | 45.0 | 3.12e-01 | 99.1% | 43.3% |
| 3akhA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 43.0 | 3.18e-01 | 97.2% | 41.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2056399 | 101.1.2.213 ↗ | alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD | 0.62 | 38.0 | 4.49e-01 | 100.0% | 89.5% |
| 4014828 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 31.0 | 4.06e-01 | 82.6% | 94.5% |
| 3638210 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.58 | 48.0 | 3.90e-01 | 97.2% | 47.8% |
| 3731356 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.56 | 32.0 | 2.97e-01 | 90.8% | 43.7% |
| 4993562 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 35.0 | 3.58e-01 | 74.3% | 65.7% |
| 3164281 | 5069.1.1.92 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › CcmF_C | 0.55 | 40.0 | 4.22e-01 | 100.0% | 85.0% |
| 972509 | 5.1.2.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N | 0.54 | 48.0 | 3.45e-01 | 100.0% | 56.2% |
| 3258701 | 192.8.1.295 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Spindle_Spc25 | 0.53 | 35.0 | 2.88e-01 | 87.2% | 33.2% |
| 3206195 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 33.0 | 2.48e-01 | 92.7% | 23.9% |
| 4962493 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.53 | 32.0 | 3.46e-01 | 94.5% | 70.5% |
| 4014614 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.52 | 33.0 | 3.00e-01 | 81.7% | 44.7% |
| 4661118 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.52 | 41.0 | 3.95e-01 | 84.4% | 82.4% |
| 2466355 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.52 | 39.0 | 3.89e-01 | 87.2% | 74.8% |
| 3802472 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.52 | 47.0 | 3.43e-01 | 100.0% | 38.4% |
| 4976092 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 33.0 | 3.60e-01 | 74.3% | 77.8% |
| 3527512 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.52 | 44.0 | 4.09e-01 | 94.5% | 82.1% |
| 3553885 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.51 | 43.0 | 4.04e-01 | 93.6% | 80.0% |
| 4343392 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 43.0 | 4.35e-01 | 93.6% | 93.6% |
| 4945010 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 44.0 | 3.16e-01 | 97.2% | 46.1% |