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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00036
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00036
Identity
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-206
Domain cluster:
rep: KR131710.1__AKC57523.1__HMPREF1993_00030__00029__D24-165
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vqqA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.65 | 43.0 | 5.21e-01 | 99.4% | 100.0% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 45.0 | 5.04e-01 | 98.8% | 95.3% |
| 3robA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 46.0 | 5.06e-01 | 100.0% | 94.7% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 41.0 | 4.03e-01 | 95.1% | 62.5% |
| 3g16B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 43.0 | 4.51e-01 | 100.0% | 78.3% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 45.0 | 4.97e-01 | 100.0% | 96.9% |
| 3kspA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 4.65e-01 | 98.8% | 92.2% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.58 | 23.0 | 3.65e-01 | 81.5% | 100.0% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 43.0 | 4.71e-01 | 100.0% | 92.5% |
| 3bb9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 4.78e-01 | 98.8% | 97.6% |
| 1c7hA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 4.62e-01 | 100.0% | 95.9% |
| 7f13A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 4.43e-01 | 100.0% | 86.1% |
| 3rgaA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 4.63e-01 | 100.0% | 94.7% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 38.0 | 4.35e-01 | 95.1% | 93.5% |
| 3rgaA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 45.0 | 4.74e-01 | 100.0% | 95.3% |
| 1s5aB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 42.0 | 4.44e-01 | 100.0% | 90.2% |
| 4lgqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 41.0 | 4.47e-01 | 100.0% | 95.5% |
| 3f7xA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 41.0 | 4.46e-01 | 100.0% | 95.5% |
| 5i97C00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.54 | 43.0 | 4.65e-01 | 98.8% | 99.3% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 4.38e-01 | 100.0% | 93.9% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 41.0 | 4.45e-01 | 100.0% | 97.0% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 4.21e-01 | 100.0% | 90.8% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 20.0 | 2.49e-01 | 81.5% | 53.3% |
| 6a5gA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 4.36e-01 | 99.4% | 99.3% |
| 6iy8A01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.50 | 29.0 | 2.83e-01 | 100.0% | 47.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1388518 | 243.1.1.33 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5105 | 0.71 | 65.0 | 6.26e-01 | 99.4% | 98.9% |
| 4562263 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.62 | 48.0 | 3.87e-01 | 98.1% | 42.8% |
| 996861 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.61 | 44.0 | 4.81e-01 | 100.0% | 89.5% |
| 3963537 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.60 | 47.0 | 3.86e-01 | 96.9% | 44.5% |
| 3219090 | 243.1.1.47 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5390 | 0.59 | 43.0 | 4.93e-01 | 98.8% | 98.4% |
| 4208499 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.59 | 47.0 | 3.81e-01 | 97.5% | 44.1% |
| 4886009 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.59 | 47.0 | 3.84e-01 | 97.5% | 45.3% |
| 331637 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.58 | 46.0 | 3.77e-01 | 96.9% | 44.1% |
| 3945348 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.58 | 34.0 | 4.18e-01 | 83.3% | 92.0% |
| 5047377 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.58 | 46.0 | 4.97e-01 | 98.8% | 96.4% |
| 4018060 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.57 | 42.0 | 4.68e-01 | 100.0% | 94.6% |
| 4014240 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 41.0 | 4.39e-01 | 97.5% | 82.8% |
| 4066506 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.57 | 21.0 | 2.61e-01 | 81.5% | 50.5% |
| 3693361 | 9.13.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 | 0.56 | 35.0 | 4.24e-01 | 98.8% | 95.2% |
| 3287863 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 42.0 | 4.61e-01 | 100.0% | 95.4% |
| 6400 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 39.0 | 4.51e-01 | 97.5% | 98.3% |
| 3559721 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.56 | 36.0 | 3.43e-01 | 98.1% | 55.1% |
| 3688336 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 41.0 | 4.36e-01 | 100.0% | 86.2% |
| 4339156 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.55 | 45.0 | 4.69e-01 | 100.0% | 94.0% |
| 3692485 | 243.1.1.87 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF | 0.55 | 43.0 | 4.34e-01 | 100.0% | 83.0% |
| 3961916 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.54 | 37.0 | 4.32e-01 | 96.3% | 97.4% |
| 3168414 | 4099.1.1.46 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30283 | 0.54 | 33.0 | 3.74e-01 | 94.4% | 78.4% |
| 2845531 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 40.0 | 4.19e-01 | 100.0% | 83.9% |
| 3238560 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 43.0 | 4.49e-01 | 96.3% | 92.4% |
| 134348 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.54 | 40.0 | 4.37e-01 | 100.0% | 93.2% |
| 3256136 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 42.0 | 4.35e-01 | 100.0% | 86.5% |
| 3202202 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 43.0 | 4.52e-01 | 100.0% | 94.5% |
| 5004589 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.53 | 31.0 | 3.73e-01 | 88.9% | 86.4% |
| 3885513 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.53 | 42.0 | 4.18e-01 | 98.8% | 82.3% |
| 3622132 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 39.0 | 4.16e-01 | 96.3% | 88.6% |
| 3472001 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 30.0 | 3.49e-01 | 76.5% | 78.3% |
| 4022036 | 243.1.1.87 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF | 0.52 | 44.0 | 4.24e-01 | 100.0% | 79.2% |
| 3221640 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.52 | 41.0 | 4.41e-01 | 98.8% | 97.1% |
| 4562028 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.52 | 37.0 | 3.92e-01 | 96.9% | 82.1% |
| 3816855 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 33.0 | 3.78e-01 | 83.3% | 84.8% |
| 3503101 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.51 | 42.0 | 4.30e-01 | 99.4% | 90.3% |
| 3530920 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.51 | 46.0 | 4.29e-01 | 99.4% | 78.0% |
| 3402622 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.51 | 41.0 | 4.44e-01 | 98.8% | 99.3% |
| 3284100 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.51 | 41.0 | 4.06e-01 | 100.0% | 81.2% |