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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00059
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00059
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 195-308
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26926.1 best | Phage_T4_rIIB | 70.9 | 1.40e-19 | 81.6% | 19.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gknA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.51 | 25.0 | 3.06e-01 | 86.8% | 74.6% |
D2
medium
residues 21-104
D3
medium
residues 105-187
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.68 | 47.0 | 5.15e-01 | 81.9% | 89.4% |
| 2hytA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 42.0 | 3.30e-01 | 78.3% | 62.7% |
| 2bjfA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.56 | 41.0 | 2.88e-01 | 80.7% | 82.7% |
| 6ks6a01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.55 | 45.0 | 3.14e-01 | 89.2% | 51.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4814019 | 148.1.3.2 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC3_N | 0.61 | 42.0 | 3.09e-01 | 80.7% | 26.1% |
| 3468141 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.58 | 48.0 | 3.77e-01 | 92.8% | 65.4% |
| 2140410 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.57 | 35.0 | 2.85e-01 | 77.1% | 30.5% |
| 3863917 | 2498.1.1.35 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 | 0.52 | 45.0 | 3.10e-01 | 100.0% | 91.7% |