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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00082
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00082
Identity
- Kingdom:
- phage
Quality
76.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-94
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ogjA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.60 | 39.0 | 3.20e-01 | 75.4% | 33.9% |
| 5dn6I00 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.60 | 42.0 | 3.94e-01 | 77.2% | 58.7% |
| 1aqtA01 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.59 | 42.0 | 3.73e-01 | 77.2% | 50.0% |
| 3pp9B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 43.0 | 3.14e-01 | 87.7% | 49.4% |
| 1gteA04 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 37.0 | 2.76e-01 | 70.2% | 87.6% |
| 1wzlA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 33.0 | 2.97e-01 | 80.7% | 42.2% |
| 1ntyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 39.0 | 3.18e-01 | 87.7% | 37.9% |
| 4asmB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 2.69e-01 | 93.0% | 15.4% |
| 1zc1A02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 35.0 | 3.26e-01 | 71.9% | 100.0% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 2.87e-01 | 77.2% | 61.1% |
| 1c3kA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.51 | 35.0 | 2.69e-01 | 70.2% | 69.2% |
| 4iqzB01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 35.0 | 3.31e-01 | 75.4% | 69.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3734353 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.71 | 49.0 | 4.12e-01 | 77.2% | 42.0% |
| 3698245 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.71 | 51.0 | 2.95e-01 | 80.7% | 8.7% |
| 5050189 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 42.0 | 3.72e-01 | 75.4% | 42.4% |
| 3197355 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.66 | 48.0 | 4.75e-01 | 78.9% | 76.7% |
| 3192572 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.61 | 42.0 | 4.19e-01 | 75.4% | 70.0% |
| 3959053 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 43.0 | 3.07e-01 | 78.9% | 23.2% |
| 3168807 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.61 | 42.0 | 3.55e-01 | 77.2% | 40.0% |
| 3206965 | 56.1.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N | 0.60 | 42.0 | 4.27e-01 | 75.4% | 81.8% |
| 3618922 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.59 | 41.0 | 3.61e-01 | 75.4% | 67.4% |
| 4033074 | 2008.1.1.83 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1064 | 0.59 | 47.0 | 3.65e-01 | 86.0% | 58.1% |
| 3702718 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.54 | 36.0 | 2.42e-01 | 70.2% | 62.4% |
| 3929739 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.53 | 37.0 | 2.09e-01 | 75.4% | 17.9% |
| 3664321 | 56.1.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N | 0.53 | 36.0 | 3.70e-01 | 75.4% | 80.0% |
| 3704983 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 37.0 | 2.78e-01 | 77.2% | 88.6% |
| 4947491 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 40.0 | 2.90e-01 | 82.5% | 83.7% |
| 3829139 | 231.1.3.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Neutral ceramidase large domain › Ceramidase_alk | 0.52 | 37.0 | 2.20e-01 | 78.9% | 84.1% |
| 4013634 | 218.2.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 | 0.51 | 41.0 | 3.05e-01 | 98.2% | 77.7% |
| 2664854 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.50 | 38.0 | 3.25e-01 | 86.0% | 69.6% |