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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00087
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00087
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-163
Domain cluster:
rep: DQ372923.1__ABD94186.1__X__00021__D26-172
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00772.27 best | DnaB | 26.3 | 8.80e-06 | 55.1% | 61.2% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gxvB00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.91 | 65.0 | 7.38e-01 | 85.9% | 92.7% |
| 2r5uC00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.90 | 75.0 | 7.95e-01 | 98.7% | 97.1% |
| 3bgwA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.86 | 70.0 | 7.62e-01 | 99.4% | 100.0% |
| 6qelA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.84 | 73.0 | 7.46e-01 | 100.0% | 93.4% |
| 2g3bA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 38.0 | 3.61e-01 | 78.2% | 81.8% |
| 4dvyP03 | 1.20.120.1270 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CagA exotoxin domain III | 0.51 | 38.0 | 3.74e-01 | 79.5% | 72.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4522132 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.92 | 81.0 | 5.55e-01 | 100.0% | 31.0% |
| 4548850 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.92 | 80.0 | 5.56e-01 | 100.0% | 32.6% |
| 4272859 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.92 | 80.0 | 8.30e-01 | 100.0% | 96.6% |
| 2979225 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.91 | 80.0 | 7.66e-01 | 100.0% | 80.1% |
| 137909 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.91 | 65.0 | 7.34e-01 | 85.3% | 92.6% |
| 4339055 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.91 | 76.0 | 5.28e-01 | 100.0% | 30.3% |
| 4506456 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.91 | 79.0 | 8.08e-01 | 100.0% | 93.3% |
| 3979830 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.90 | 79.0 | 5.40e-01 | 100.0% | 31.0% |
| 1695201 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.89 | 75.0 | 7.48e-01 | 100.0% | 85.0% |
| 4214084 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.88 | 78.0 | 5.44e-01 | 100.0% | 32.9% |
| 3222 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.88 | 55.0 | 6.90e-01 | 73.1% | 97.1% |
| 4132802 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.87 | 75.0 | 7.72e-01 | 100.0% | 93.3% |
| None | — | 0.87 | 77.0 | 5.42e-01 | 100.0% | 33.6% | |
| 3573701 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.78 | 64.0 | 6.81e-01 | 100.0% | 99.3% |
| 3947982 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.71 | 61.0 | 6.24e-01 | 100.0% | 95.3% |
| 3625011 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.68 | 31.0 | 3.17e-01 | 100.0% | 42.6% |
| 4433045 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.65 | 53.0 | 5.66e-01 | 100.0% | 98.5% |
| 3390382 | 174.1.1.29 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 | 0.64 | 33.0 | 3.27e-01 | 99.4% | 46.7% |
| 3917720 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 28.0 | 3.08e-01 | 85.3% | 55.4% |
| 4940888 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.56 | 32.0 | 3.14e-01 | 83.3% | 49.1% |
| 5001630 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.55 | 30.0 | 3.00e-01 | 100.0% | 47.6% |
D2
medium
residues 196-247_316-369_381-434
Domain cluster:
rep: KU878967.1__ANA49993.1__X__00025__D9-110
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03796.22 best | DnaB_C | 81.4 | 1.00e-22 | 66.9% | 41.6% |
| PF03796.22 | DnaB_C | 35.7 | 9.10e-09 | 40.0% | 21.2% |
D3
medium
residues 248-265_435-527
D4
medium
residues 266-315
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.76 | 60.0 | 4.34e-01 | 96.0% | 31.4% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 53.0 | 4.20e-01 | 74.0% | 39.8% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.74 | 40.0 | 4.27e-01 | 72.0% | 60.0% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.71 | 60.0 | 4.01e-01 | 94.0% | 88.9% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.71 | 56.0 | 5.35e-01 | 100.0% | 74.6% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 58.0 | 5.91e-01 | 94.0% | 95.9% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.70 | 56.0 | 5.54e-01 | 100.0% | 84.6% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 59.0 | 5.12e-01 | 100.0% | 62.0% |
| 2i76A02 | 1.10.1040.20 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › ProC-like, C-terminal domain | 0.69 | 61.0 | 4.80e-01 | 100.0% | 50.0% |
| 3ag7A00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.69 | 58.0 | 4.63e-01 | 98.0% | 74.3% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 61.0 | 4.94e-01 | 100.0% | 76.6% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 58.0 | 5.12e-01 | 96.0% | 78.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 55.0 | 4.91e-01 | 100.0% | 63.5% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 51.0 | 5.07e-01 | 94.0% | 88.2% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.64 | 51.0 | 4.51e-01 | 88.0% | 79.7% |
| 3q2eA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.64 | 53.0 | 4.28e-01 | 100.0% | 97.2% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.63 | 56.0 | 4.89e-01 | 100.0% | 91.9% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 51.0 | 4.21e-01 | 100.0% | 51.5% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 42.0 | 4.23e-01 | 76.0% | 75.5% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 51.0 | 4.71e-01 | 100.0% | 72.3% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.61 | 52.0 | 4.84e-01 | 100.0% | 79.7% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 42.0 | 4.17e-01 | 76.0% | 72.2% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.59 | 46.0 | 4.22e-01 | 88.0% | 67.6% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.53 | 42.0 | 4.16e-01 | 98.0% | 85.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3249513 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.79 | 68.0 | 6.85e-01 | 100.0% | 98.0% |
| 4545540 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 67.0 | 4.33e-01 | 100.0% | 22.3% |
| 3541668 | 192.31.1.7 ↗ | alpha bundles › Long alpha-hairpin › CP12 › CP12 › PF28906 | 0.75 | 66.0 | 5.90e-01 | 100.0% | 70.0% |
| 3343376 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.75 | 58.0 | 6.06e-01 | 100.0% | 95.6% |
| 3211407 | 3652.1.1.0 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 | 0.74 | 64.0 | 6.46e-01 | 100.0% | 98.0% |
| 4428645 | 3826.1.1.80 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GrpE | 0.73 | 58.0 | 5.46e-01 | 90.0% | 71.7% |
| 4981747 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.72 | 55.0 | 5.11e-01 | 96.0% | 64.6% |
| 3729168 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.69 | 53.0 | 3.48e-01 | 84.0% | 21.4% |
| 5010583 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 51.0 | 4.04e-01 | 88.0% | 37.3% |
| 2665702 | 3146.1.1.3 ↗ | a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL | 0.61 | 49.0 | 4.00e-01 | 100.0% | 78.3% |
| 3806609 | 540.1.1.1 ↗ | few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B | 0.57 | 43.0 | 3.85e-01 | 84.0% | 56.0% |