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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00092
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00092
Identity
- Kingdom:
- phage
Quality
49.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 207-272
D2
medium
residues 185-206_273-319
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.63 | 49.0 | 4.54e-01 | 94.2% | 66.7% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 45.0 | 3.89e-01 | 100.0% | 47.4% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 45.0 | 4.07e-01 | 97.1% | 61.4% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 4.19e-01 | 100.0% | 65.7% |
| 4cgyA01 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 48.0 | 3.60e-01 | 97.1% | 83.0% |
| 3d4gE03 | 2.60.40.3210 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain | 0.56 | 35.0 | 3.16e-01 | 87.0% | 43.6% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 40.0 | 4.07e-01 | 100.0% | 81.5% |
| 2oplA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.55 | 41.0 | 3.22e-01 | 84.1% | 37.2% |
| 2y6uA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 44.0 | 2.88e-01 | 94.2% | 84.0% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.54 | 41.0 | 3.31e-01 | 82.6% | 46.7% |
| 5h9fJ00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 45.0 | 3.30e-01 | 100.0% | 50.7% |
| 1lqlA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.54 | 44.0 | 3.97e-01 | 95.7% | 68.9% |
| 1nyeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 39.0 | 3.24e-01 | 82.6% | 81.1% |
| 5jtwA06 | 6.20.50.160 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.53 | 29.0 | 3.03e-01 | 73.9% | 54.8% |
| 2kdoA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.53e-01 | 97.1% | 63.7% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.52 | 42.0 | 3.81e-01 | 94.2% | 71.6% |
| 7r9xA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.52 | 37.0 | 2.69e-01 | 79.7% | 85.9% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.59e-01 | 100.0% | 64.2% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 41.0 | 2.90e-01 | 92.8% | 87.7% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 42.0 | 3.64e-01 | 95.7% | 80.7% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3479658 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.64 | 52.0 | 4.72e-01 | 87.0% | 66.7% |
| 3289468 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 48.0 | 4.82e-01 | 95.7% | 85.7% |
| 3726495 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.61 | 48.0 | 3.17e-01 | 89.9% | 70.5% |
| 4929350 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 46.0 | 4.43e-01 | 95.7% | 73.8% |
| 5024720 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.60 | 43.0 | 4.39e-01 | 97.1% | 81.5% |
| 5050596 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 43.0 | 4.29e-01 | 98.6% | 77.1% |
| 4028387 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.57 | 46.0 | 4.24e-01 | 100.0% | 68.4% |
| 4387576 | 304.5.1.1 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II | 0.57 | 49.0 | 4.31e-01 | 98.6% | 68.6% |
| 3265334 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 40.0 | 3.50e-01 | 82.6% | 47.3% |
| 5052778 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.56 | 41.0 | 2.73e-01 | 78.3% | 50.0% |
| 3666982 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 41.0 | 3.74e-01 | 82.6% | 60.0% |
| 3492664 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 43.0 | 2.94e-01 | 92.8% | 56.3% |
| 3786818 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.53 | 43.0 | 3.22e-01 | 94.2% | 84.6% |
| 4955298 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.53 | 40.0 | 3.29e-01 | 84.1% | 46.7% |
| 5065095 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 43.0 | 3.85e-01 | 98.6% | 65.5% |
| 4012995 | 207.1.1.243 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DUF7730 | 0.52 | 37.0 | 2.62e-01 | 78.3% | 96.6% |
| 3493392 | 70.3.1.13 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET_TTL | 0.52 | 44.0 | 3.13e-01 | 100.0% | 72.9% |
| 3298364 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.52 | 41.0 | 4.28e-01 | 87.0% | 100.0% |
| 3495305 | 3785.1.1.1 ↗ | a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › SARA_C | 0.52 | 41.0 | 3.37e-01 | 91.3% | 96.5% |
| 5053043 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.52 | 33.0 | 2.76e-01 | 81.2% | 34.6% |
| 3708096 | 3926.1.1.0 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D | 0.52 | 39.0 | 3.10e-01 | 82.6% | 51.6% |
| 3797048 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.52 | 43.0 | 3.88e-01 | 98.6% | 87.6% |
| 3660053 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 42.0 | 3.12e-01 | 98.6% | 85.5% |
| 3696797 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 45.0 | 2.79e-01 | 98.6% | 73.2% |
| 3490572 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 43.0 | 3.29e-01 | 100.0% | 57.4% |
| 5070838 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.51 | 41.0 | 3.02e-01 | 89.9% | 89.5% |
| 3476563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 36.0 | 3.12e-01 | 78.3% | 82.5% |
| 3993341 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 34.0 | 3.20e-01 | 85.5% | 55.3% |
| 3939681 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.50 | 37.0 | 2.49e-01 | 82.6% | 31.8% |
| 3990877 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.50 | 36.0 | 3.12e-01 | 89.9% | 47.0% |