Back to structures

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00118

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00118

Identity

Kingdom:
phage

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-81_93-143
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10881.15 best DUF2726 26.7 5.70e-06 73.8% 47.6%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.77 56.0 6.31e-01 93.7% 95.9%
1t0fA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.73 58.0 5.29e-01 82.5% 66.7%
6p4wB01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.68 56.0 5.95e-01 92.1% 100.0%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 56.0 5.29e-01 94.4% 87.2%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 48.0 5.25e-01 100.0% 100.0%
6p66D01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.62 50.0 5.29e-01 96.0% 100.0%
3cw9A01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 38.0 3.44e-01 86.5% 46.0%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 49.0 4.93e-01 87.3% 89.6%
3odhA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.58 48.0 4.12e-01 100.0% 56.7%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 52.0 4.83e-01 96.8% 82.2%
1di0A00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.57 50.0 4.79e-01 96.8% 87.8%
4r81C00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.57 47.0 4.11e-01 91.3% 92.4%
3u4qA06 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.56 48.0 4.02e-01 92.9% 75.0%
2b78A02 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.56 33.0 3.59e-01 81.7% 70.6%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 41.0 3.90e-01 79.4% 94.1%
1t5bB00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 46.0 3.97e-01 91.3% 90.4%
4j07A00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.55 48.0 4.54e-01 96.8% 82.2%
3wxmB03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.55 35.0 3.75e-01 80.2% 74.8%
2q3fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 4.17e-01 93.7% 92.7%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 34.0 4.03e-01 73.0% 95.3%
2qu8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 47.0 4.08e-01 100.0% 86.1%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.52 43.0 3.98e-01 88.9% 69.8%
3pdiB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 46.0 4.39e-01 99.2% 84.1%
1rliD00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 44.0 3.99e-01 91.3% 92.9%
4p0tB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 4.31e-01 99.2% 92.7%
2e87A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.74e-01 92.1% 80.0%
1ycdB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.53e-01 93.7% 90.3%
5lddC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 4.03e-01 96.8% 91.7%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 4.02e-01 96.8% 94.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953141 2008.1.1.121 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MTES_1575 0.77 60.0 6.57e-01 96.8% 98.1%
3284171 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 53.0 4.95e-01 81.7% 58.7%
4940209 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 47.0 5.40e-01 92.9% 83.2%
3517411 2008.1.1.30 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Tn7_TnsA-like_N 0.72 64.0 5.46e-01 96.0% 74.0%
5082493 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 48.0 5.57e-01 79.4% 97.8%
5010590 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 49.0 5.35e-01 87.3% 90.5%
4525524 2008.1.1.164 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26568 0.67 61.0 5.39e-01 96.8% 76.6%
4088649 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.67 50.0 5.57e-01 91.3% 99.0%
3603694 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 57.0 5.73e-01 93.7% 90.0%
1030945 2008.1.1.34 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc 0.65 57.0 5.61e-01 94.4% 96.3%
3604181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 54.0 4.50e-01 91.3% 58.1%
4960251 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.63 56.0 5.55e-01 96.8% 93.2%
5018603 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.62 55.0 4.43e-01 93.7% 82.5%
2983287 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 56.0 5.57e-01 97.6% 97.7%
4975459 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 57.0 5.29e-01 99.2% 92.3%
4929290 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 52.0 5.27e-01 90.5% 94.4%
4926971 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 53.0 4.98e-01 92.9% 80.6%
4967964 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.62 51.0 5.18e-01 92.1% 88.0%
4402765 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 56.0 5.57e-01 97.6% 96.9%
5080539 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 53.0 4.92e-01 90.5% 87.6%
1144868 2008.1.1.66 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ArenaCapSnatch 0.61 47.0 4.25e-01 84.1% 59.8%
3287525 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 55.0 5.14e-01 95.2% 91.3%
5076295 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.61 54.0 5.26e-01 94.4% 97.8%
3838596 2008.1.1.85 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.61 51.0 4.31e-01 89.7% 64.4%
4113346 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.60 49.0 4.08e-01 85.7% 71.9%
5049398 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 49.0 4.61e-01 96.8% 72.7%
4956648 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.59 51.0 5.00e-01 91.3% 94.1%
5057728 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 51.0 5.19e-01 95.2% 100.0%
140941 2008.1.1.8 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › BamHI 0.58 48.0 4.12e-01 100.0% 56.7%
4943737 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 50.0 4.63e-01 100.0% 73.8%
5035570 2008.1.1.160 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27151 0.58 49.0 4.51e-01 91.3% 80.4%
4047845 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.57 48.0 3.88e-01 89.7% 49.6%
3515505 2004.1.1.534 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30386 0.57 48.0 4.00e-01 91.3% 70.7%
3272537 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.57 48.0 3.92e-01 92.1% 95.1%
5011600 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.57 45.0 4.78e-01 86.5% 94.5%
3414798 2004.1.1.534 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30386 0.57 49.0 4.19e-01 93.7% 71.5%
4263677 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 36.0 3.91e-01 80.2% 76.2%
5047016 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.56 47.0 4.59e-01 99.2% 83.0%
4101307 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 49.0 2.83e-01 95.2% 13.2%
5057822 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.56 46.0 4.37e-01 86.5% 77.2%
4943619 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.56 35.0 3.90e-01 73.0% 82.1%
4467601 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.56 49.0 3.84e-01 95.2% 63.1%
5038291 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.55 48.0 4.81e-01 98.4% 92.3%
4971090 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.55 43.0 2.85e-01 81.0% 31.4%
3596094 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.55 48.0 3.85e-01 93.7% 94.2%
None 0.55 47.0 2.72e-01 92.9% 12.6%
4980276 2007.1.14.7 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.55 48.0 4.06e-01 93.7% 64.9%
4060254 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.55 48.0 3.83e-01 95.2% 61.6%
4414555 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.55 48.0 3.78e-01 95.2% 64.1%
4096358 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.55 47.0 4.03e-01 92.9% 77.0%
2643927 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.54 35.0 4.08e-01 73.8% 94.3%
4530056 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.54 47.0 4.14e-01 93.7% 89.4%
3212014 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 46.0 4.05e-01 93.7% 90.5%
3386658 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.53 46.0 4.12e-01 92.9% 78.3%
4166691 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 47.0 4.24e-01 98.4% 77.1%
4292847 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.53 47.0 3.26e-01 96.8% 39.8%
3245213 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 38.0 4.07e-01 92.1% 91.3%
4136811 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 46.0 3.84e-01 96.8% 76.3%
3167427 7579.1.1.25 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FSH1 0.52 43.0 3.51e-01 91.3% 88.1%
4477973 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 45.0 3.86e-01 100.0% 83.8%
4294142 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 45.0 3.23e-01 100.0% 42.0%
5046572 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 43.0 3.86e-01 93.7% 90.0%
3276751 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.50 35.0 3.65e-01 74.6% 75.8%
None 0.50 42.0 3.78e-01 92.1% 87.8%
4024963 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.50 43.0 3.78e-01 95.2% 91.6%