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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00127
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00127
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-38_52-206
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00354__D1-153
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04542.21 best | Sigma70_r2 | 32.0 | 1.20e-07 | 40.8% | 74.7% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ldiF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.94 | 44.0 | 6.24e-01 | 85.5% | 87.5% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.87 | 41.0 | 6.13e-01 | 77.7% | 98.8% |
| 5yixA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.75 | 61.0 | 4.86e-01 | 83.8% | 100.0% |
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.73 | 61.0 | 6.12e-01 | 86.6% | 90.2% |
| 1sigA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.73 | 60.0 | 4.90e-01 | 84.9% | 100.0% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 30.0 | 3.96e-01 | 70.9% | 77.6% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.57 | 36.0 | 4.30e-01 | 81.0% | 94.2% |
| 4mk6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 36.0 | 3.63e-01 | 86.6% | 67.0% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 28.0 | 3.29e-01 | 70.4% | 73.0% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 30.0 | 3.75e-01 | 82.1% | 93.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4513974 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.95 | 52.0 | 6.41e-01 | 86.6% | 81.7% |
| 4631806 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.95 | 52.0 | 4.94e-01 | 86.6% | 49.0% |
| 4053923 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.95 | 49.0 | 6.64e-01 | 86.6% | 89.5% |
| 4624390 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.94 | 49.0 | 6.27e-01 | 86.6% | 81.7% |
| 3972284 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.94 | 49.0 | 6.20e-01 | 85.5% | 80.9% |
| 4349095 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.94 | 48.0 | 6.03e-01 | 84.9% | 79.1% |
| 4258677 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.93 | 49.0 | 4.43e-01 | 86.6% | 41.8% |
| None | — | 0.93 | 49.0 | 4.47e-01 | 86.6% | 42.7% | |
| 3090120 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.92 | 49.0 | 6.10e-01 | 86.6% | 80.5% |
| 4056597 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.92 | 63.0 | 5.07e-01 | 86.6% | 39.8% |
| None | — | 0.89 | 49.0 | 4.35e-01 | 86.6% | 40.4% | |
| 4238054 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.89 | 49.0 | 4.34e-01 | 86.6% | 40.4% |
| 3428775 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 62.0 | 4.99e-01 | 86.6% | 42.5% |
| None | — | 0.84 | 63.0 | 6.58e-01 | 86.6% | 82.4% | |
| 3664504 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.84 | 62.0 | 6.63e-01 | 86.6% | 84.8% |
| 3299379 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.84 | 62.0 | 6.76e-01 | 86.6% | 89.3% |
| 3360961 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.84 | 61.0 | 6.26e-01 | 86.6% | 76.6% |
| None | — | 0.83 | 61.0 | 6.72e-01 | 86.6% | 89.3% | |
| 3828850 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.79 | 57.0 | 6.20e-01 | 86.0% | 86.7% |
| 3676572 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.78 | 57.0 | 5.81e-01 | 86.6% | 76.6% |
| 3278088 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.78 | 47.0 | 6.02e-01 | 88.3% | 99.1% |
| 3339567 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.77 | 62.0 | 6.21e-01 | 86.6% | 81.7% |
| 4269761 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.77 | 65.0 | 6.33e-01 | 86.6% | 93.2% |
| 4452096 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.76 | 64.0 | 6.20e-01 | 86.6% | 91.3% |
| 3386022 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.76 | 62.0 | 4.92e-01 | 84.4% | 99.4% |
| 3838866 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.76 | 63.0 | 4.84e-01 | 86.6% | 89.1% |
| 3978386 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.76 | 63.0 | 4.94e-01 | 86.6% | 96.9% |
| 4106336 | 142.1.1.4 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2,Sigma70_ner | 0.74 | 61.0 | 4.95e-01 | 85.5% | 99.4% |
| 4484001 | 142.1.1.4 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2,Sigma70_ner | 0.74 | 60.0 | 4.78e-01 | 84.4% | 99.7% |
| 4225227 | 142.1.1.2 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 0.74 | 62.0 | 4.78e-01 | 86.6% | 96.7% |
| 3963570 | 142.1.1.2 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 0.74 | 62.0 | 4.77e-01 | 86.6% | 95.6% |
| 4218058 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.73 | 61.0 | 4.91e-01 | 86.6% | 96.0% |
| 4322147 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 61.0 | 4.31e-01 | 86.6% | 62.5% |
| 4108773 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.72 | 61.0 | 4.84e-01 | 86.6% | 96.0% |
| 4319899 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.66 | 54.0 | 4.59e-01 | 86.6% | 95.2% |
| None | — | 0.58 | 52.0 | 4.04e-01 | 92.7% | 50.6% |
D2
high
residues 301-389
Domain cluster:
rep: JN880423.1__AFJ21457.1__X__00002__D186-263
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 59.0 | 6.84e-01 | 83.1% | 100.0% |
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 55.0 | 6.64e-01 | 70.8% | 100.0% |
| 1s7oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 60.0 | 5.60e-01 | 83.1% | 63.8% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 55.0 | 6.45e-01 | 75.3% | 96.9% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 51.0 | 6.19e-01 | 71.9% | 96.7% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 53.0 | 5.82e-01 | 89.9% | 86.1% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 49.0 | 5.90e-01 | 74.2% | 96.7% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 52.0 | 6.05e-01 | 73.0% | 96.8% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 49.0 | 5.35e-01 | 80.9% | 78.7% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.71 | 54.0 | 5.11e-01 | 79.8% | 77.4% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.71 | 51.0 | 5.01e-01 | 74.2% | 70.2% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 59.0 | 5.68e-01 | 89.9% | 89.1% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 59.0 | 6.25e-01 | 91.0% | 100.0% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 46.0 | 4.96e-01 | 80.9% | 78.9% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.69 | 53.0 | 4.75e-01 | 80.9% | 65.0% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 50.0 | 5.25e-01 | 96.6% | 83.7% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.68 | 53.0 | 4.68e-01 | 84.3% | 68.4% |
| 2da4A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 46.0 | 5.16e-01 | 75.3% | 97.0% |
| 3k9tA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 42.0 | 4.73e-01 | 85.4% | 89.4% |
| 1xwyA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.64 | 50.0 | 3.60e-01 | 84.3% | 85.0% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 35.0 | 3.69e-01 | 78.7% | 60.2% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 42.0 | 4.27e-01 | 89.9% | 74.2% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 42.0 | 4.29e-01 | 96.6% | 74.4% |
| 3oopA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 4.18e-01 | 87.6% | 81.3% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.59 | 34.0 | 3.71e-01 | 77.5% | 67.6% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.14e-01 | 77.5% | 82.0% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.56 | 35.0 | 3.90e-01 | 71.9% | 80.9% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 41.0 | 4.18e-01 | 93.3% | 81.2% |
| 2efeA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.56 | 39.0 | 4.07e-01 | 95.5% | 80.2% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.55 | 50.0 | 4.36e-01 | 98.9% | 74.8% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 46.0 | 4.03e-01 | 98.9% | 85.0% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 32.0 | 3.63e-01 | 71.9% | 77.9% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 4.07e-01 | 86.5% | 78.7% |
| 2nsfA01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 44.0 | 3.65e-01 | 92.1% | 96.2% |
| 4au2B01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.52 | 43.0 | 3.30e-01 | 92.1% | 71.9% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 36.0 | 3.45e-01 | 71.9% | 84.0% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2448404 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.88 | 58.0 | 6.95e-01 | 78.7% | 100.0% |
| 4165188 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.84 | 61.0 | 6.28e-01 | 82.0% | 78.8% |
| 3959868 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 60.0 | 6.47e-01 | 82.0% | 88.0% |
| 4026959 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.83 | 69.0 | 4.49e-01 | 86.5% | 24.5% |
| 4683276 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.83 | 66.0 | 6.46e-01 | 89.9% | 77.9% |
| 3959252 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.82 | 54.0 | 6.56e-01 | 75.3% | 100.0% |
| 3946805 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.81 | 63.0 | 6.85e-01 | 86.5% | 97.3% |
| 3955987 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.80 | 60.0 | 5.89e-01 | 84.3% | 73.7% |
| 4396640 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.78 | 63.0 | 5.63e-01 | 89.9% | 63.3% |
| 4175748 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.77 | 62.0 | 6.56e-01 | 100.0% | 95.0% |
| 3574560 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 59.0 | 5.90e-01 | 79.8% | 93.3% |
| 4160122 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.77 | 61.0 | 5.02e-01 | 88.8% | 49.3% |
| 3978620 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.76 | 68.0 | 5.42e-01 | 96.6% | 51.5% |
| 3964463 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.76 | 57.0 | 5.29e-01 | 83.1% | 63.6% |
| 4518447 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.75 | 67.0 | 6.23e-01 | 96.6% | 77.3% |
| 4165729 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.75 | 54.0 | 4.27e-01 | 74.2% | 40.0% |
| 2527024 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.75 | 62.0 | 6.34e-01 | 87.6% | 98.8% |
| None | — | 0.74 | 60.0 | 4.37e-01 | 86.5% | 34.1% | |
| 3297365 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.74 | 68.0 | 5.38e-01 | 100.0% | 51.5% |
| 4084282 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.74 | 63.0 | 6.45e-01 | 96.6% | 95.3% |
| 5034407 | 101.1.1.540 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 | 0.74 | 55.0 | 6.09e-01 | 77.5% | 100.0% |
| 3284469 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.73 | 57.0 | 6.23e-01 | 83.1% | 97.3% |
| 5073990 | 101.1.1.540 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 | 0.73 | 52.0 | 5.68e-01 | 74.2% | 89.3% |
| 3578154 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 58.0 | 5.80e-01 | 86.5% | 83.3% |
| 3922872 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.73 | 52.0 | 5.06e-01 | 73.0% | 96.8% |
| 3663639 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.73 | 67.0 | 5.34e-01 | 100.0% | 52.7% |
| 1320273 | 101.1.10.11 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin | 0.72 | 55.0 | 5.13e-01 | 79.8% | 75.2% |
| 3971149 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.72 | 56.0 | 5.88e-01 | 87.6% | 90.0% |
| 3972282 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 55.0 | 5.89e-01 | 85.4% | 92.4% |
| 3279339 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.70 | 59.0 | 4.59e-01 | 91.0% | 43.2% |
| 4213931 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.69 | 55.0 | 5.62e-01 | 88.8% | 89.4% |
| 4506167 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.69 | 53.0 | 3.87e-01 | 82.0% | 92.8% |
| 4585396 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.68 | 55.0 | 4.48e-01 | 88.8% | 47.5% |
| 4248203 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.68 | 50.0 | 3.90e-01 | 78.7% | 89.2% |
| 3974366 | 101.1.1.19 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB | 0.67 | 49.0 | 4.10e-01 | 76.4% | 74.0% |
| 4112812 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.67 | 55.0 | 5.23e-01 | 87.6% | 76.2% |
| 3926197 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 47.0 | 4.42e-01 | 74.2% | 70.9% |
| 4995680 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.66 | 44.0 | 5.22e-01 | 75.3% | 100.0% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.66 | 48.0 | 4.69e-01 | 77.5% | 77.0% |
| 4570076 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.65 | 55.0 | 3.85e-01 | 92.1% | 28.9% |
| 3412630 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.65 | 56.0 | 4.87e-01 | 94.4% | 77.0% |
| 4674817 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.64 | 56.0 | 4.48e-01 | 95.5% | 49.1% |
| 3687567 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 48.0 | 4.11e-01 | 79.8% | 58.6% |
| 4672266 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.63 | 56.0 | 3.51e-01 | 100.0% | 57.4% |
| 4290271 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.61 | 38.0 | 3.86e-01 | 82.0% | 62.2% |
| 4982919 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 48.0 | 4.42e-01 | 86.5% | 69.6% |
| 3990437 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.59 | 49.0 | 3.98e-01 | 91.0% | 47.4% |
| 3718570 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.59 | 48.0 | 4.29e-01 | 87.6% | 65.6% |
| 3306390 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.57 | 40.0 | 3.80e-01 | 84.3% | 61.9% |
| 3200990 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 45.0 | 3.81e-01 | 100.0% | 52.0% |
| 4966784 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 31.0 | 3.62e-01 | 73.0% | 81.7% |
| 222846 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.55 | 35.0 | 3.48e-01 | 73.0% | 61.3% |
| 4224260 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 46.0 | 4.54e-01 | 93.3% | 87.4% |
| 3714315 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 41.0 | 3.88e-01 | 85.4% | 69.5% |
| 3289184 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.53 | 46.0 | 3.22e-01 | 100.0% | 60.0% |
| 3705964 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 40.0 | 3.91e-01 | 85.4% | 73.0% |
| 3449495 | 601.18.1.14 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › MPH2 | 0.53 | 45.0 | 3.84e-01 | 94.4% | 77.8% |
| 3215342 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.52 | 37.0 | 3.61e-01 | 73.0% | 81.1% |
| 4223385 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.52 | 36.0 | 3.44e-01 | 70.8% | 92.0% |
| 1495253 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.51 | 36.0 | 3.44e-01 | 71.9% | 84.0% |
| 3952510 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.51 | 35.0 | 3.82e-01 | 70.8% | 84.0% |
| 3953227 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.50 | 34.0 | 3.31e-01 | 70.8% | 62.0% |
D3
medium
residues 210-300
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 46.0 | 4.81e-01 | 71.4% | 67.1% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 44.0 | 4.41e-01 | 71.4% | 59.3% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 49.0 | 5.14e-01 | 71.4% | 77.8% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 43.0 | 4.39e-01 | 71.4% | 61.4% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.67 | 40.0 | 3.99e-01 | 72.5% | 56.7% |
| 2yusA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 35.0 | 4.31e-01 | 73.6% | 90.6% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 37.0 | 3.93e-01 | 70.3% | 70.7% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.57 | 42.0 | 3.63e-01 | 80.2% | 89.0% |
| 1z21A00 | 1.10.10.1000 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain | 0.55 | 35.0 | 3.51e-01 | 70.3% | 61.5% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.53 | 35.0 | 3.71e-01 | 71.4% | 77.2% |
| 1hcrA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 25.0 | 3.14e-01 | 70.3% | 75.0% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 35.0 | 3.73e-01 | 72.5% | 95.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3428775 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 64.0 | 4.32e-01 | 100.0% | 25.1% |
| 3980765 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 62.0 | 5.02e-01 | 100.0% | 48.5% |
| 4086835 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.75 | 60.0 | 6.40e-01 | 98.9% | 98.8% |
| 4253265 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.75 | 61.0 | 4.97e-01 | 100.0% | 48.5% |
| 3644937 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.74 | 59.0 | 4.89e-01 | 97.8% | 48.8% |
| 5075560 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 50.0 | 4.17e-01 | 71.4% | 46.5% |
| 4631806 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.70 | 60.0 | 4.64e-01 | 100.0% | 42.5% |
| 4233279 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.69 | 55.0 | 4.07e-01 | 97.8% | 32.9% |
| 3309133 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.67 | 35.0 | 3.66e-01 | 70.3% | 54.1% |
| 5076520 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 41.0 | 4.02e-01 | 71.4% | 56.0% |
| 3876674 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 46.0 | 4.69e-01 | 73.6% | 78.9% |
| 3406010 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 44.0 | 4.34e-01 | 72.5% | 84.0% |
| 3998215 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.64 | 42.0 | 4.55e-01 | 87.9% | 82.7% |
| 3260653 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.63 | 43.0 | 4.29e-01 | 70.3% | 72.6% |
| 3680460 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.62 | 42.0 | 4.45e-01 | 70.3% | 86.3% |
| 4978149 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.61 | 38.0 | 3.74e-01 | 72.5% | 58.9% |
| 5078898 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 43.0 | 4.01e-01 | 72.5% | 60.9% |
| 4996071 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.61 | 38.0 | 3.82e-01 | 72.5% | 63.3% |
| 4961655 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.60 | 40.0 | 3.98e-01 | 76.9% | 65.3% |
| 3890334 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.60 | 42.0 | 4.22e-01 | 73.6% | 75.8% |
| 5042605 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.59 | 38.0 | 3.82e-01 | 79.1% | 64.5% |
| 4979726 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 35.0 | 3.88e-01 | 70.3% | 75.7% |
| 3477001 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 43.0 | 3.58e-01 | 76.9% | 56.0% |
| 3858855 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 39.0 | 3.30e-01 | 72.5% | 58.1% |
| 3179924 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.56 | 39.0 | 4.31e-01 | 72.5% | 95.7% |
| 3870735 | 601.25.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › OPA1_C | 0.56 | 44.0 | 4.03e-01 | 86.8% | 80.0% |
| 4127805 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.56 | 48.0 | 4.02e-01 | 93.4% | 75.3% |
| 3200977 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 49.0 | 3.23e-01 | 100.0% | 77.2% |
| 3994728 | 7094.1.1.3 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C | 0.54 | 45.0 | 3.97e-01 | 93.4% | 82.1% |
| 3719415 | 108.1.1.30 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 | 0.54 | 36.0 | 3.20e-01 | 70.3% | 64.1% |
| 3420661 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.53 | 35.0 | 3.62e-01 | 71.4% | 71.8% |
| 4279089 | 7094.1.1.3 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C | 0.53 | 44.0 | 4.05e-01 | 91.2% | 81.7% |
| 4027348 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.53 | 38.0 | 4.12e-01 | 80.2% | 93.3% |
| 3701873 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 35.0 | 3.35e-01 | 70.3% | 92.7% |