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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00163

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00163

Identity

Kingdom:
phage

Quality

70.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-233
PDB
D2 high residues 257-378
PDB
Domain cluster: rep: KY940711.1__ARQ95328.1__X__00096__D842-972
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 68.0 6.90e-01 88.5% 98.3%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 67.0 6.61e-01 89.3% 94.6%
4kt3A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.78 65.0 6.24e-01 89.3% 90.8%
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.76 60.0 5.48e-01 82.8% 88.6%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.72 67.0 5.74e-01 100.0% 96.8%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 59.0 5.11e-01 90.2% 98.9%
5dicA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.55 32.0 3.34e-01 72.1% 60.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029852 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.88 82.0 7.39e-01 97.5% 92.5%
1693577 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.86 79.0 6.29e-01 97.5% 66.7%
4007762 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.81 69.0 6.03e-01 88.5% 84.4%
1406787 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.80 68.0 6.90e-01 88.5% 98.3%
4680920 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.80 67.0 6.20e-01 88.5% 95.4%
3285050 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.79 67.0 5.93e-01 89.3% 95.2%
2138980 235.1.1.19 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT_2 0.77 66.0 4.79e-01 90.2% 76.3%
3966367 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.76 66.0 4.79e-01 91.0% 76.4%
3966371 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.76 65.0 4.75e-01 90.2% 78.0%
7426 235.1.1.19 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT_2 0.76 65.0 4.70e-01 90.2% 72.8%
4530587 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.75 63.0 5.42e-01 88.5% 92.4%
3720940 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.74 66.0 5.80e-01 95.1% 88.0%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.74 63.0 5.57e-01 89.3% 94.1%
3728943 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.65 56.0 5.01e-01 94.3% 85.9%
4986458 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.61 44.0 4.32e-01 86.9% 70.8%
3920796 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.52 36.0 4.02e-01 72.1% 92.6%
5017575 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.51 45.0 3.96e-01 100.0% 84.2%
5046452 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.50 36.0 3.54e-01 73.8% 82.3%