←Back to structures

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00177

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00177

Identity

Kingdom:
phage

Quality

65.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-214
PDB
D2 high residues 218-347
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00877.26 best NLPC_P60 25.2 1.90e-05 85.4% 66.7%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.77 67.0 7.00e-01 98.5% 99.2%
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.76 67.0 6.89e-01 100.0% 96.8%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.75 67.0 6.71e-01 100.0% 91.8%
4hz9A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 62.0 6.47e-01 99.2% 97.5%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.72 64.0 5.34e-01 95.4% 76.6%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 53.0 4.64e-01 91.5% 94.1%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 39.0 4.06e-01 85.4% 71.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 38.0 4.46e-01 98.5% 95.6%
4w79A00 3.10.620.10 Alpha Beta › Roll › C8orf32 fold › Protein N-terminal glutamine amidohydrolase, alpha beta roll 0.54 47.0 4.03e-01 94.6% 59.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 27.0 3.58e-01 92.3% 95.2%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.54 47.0 4.19e-01 99.2% 66.9%
3l24B02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.52 40.0 3.22e-01 80.8% 98.8%
4behA01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 27.0 3.47e-01 83.1% 98.4%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 31.0 3.57e-01 81.5% 84.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.64e-01 89.2% 83.0%
3ig4A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.50 37.0 3.06e-01 77.7% 94.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971907 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.77 69.0 6.88e-01 100.0% 91.9%
1094909 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 62.0 6.47e-01 99.2% 97.5%
3291045 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 56.0 6.15e-01 100.0% 97.1%
3279614 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.73 69.0 6.42e-01 100.0% 89.7%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.72 65.0 6.17e-01 95.4% 90.0%
1228348 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.72 64.0 5.47e-01 95.4% 82.9%
4576823 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.67 62.0 5.89e-01 100.0% 92.0%
5038570 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.65 42.0 4.36e-01 85.4% 70.0%
5046498 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.64 58.0 5.34e-01 97.7% 94.5%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 38.0 4.22e-01 88.5% 85.3%
3615426 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.59 40.0 3.82e-01 85.4% 59.3%
3940730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 37.0 4.21e-01 88.5% 86.3%
3519774 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 37.0 4.01e-01 89.2% 76.2%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 33.0 3.96e-01 83.1% 87.5%
3637508 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.58 27.0 3.64e-01 99.2% 86.2%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.56 27.0 3.60e-01 93.8% 89.2%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 30.0 3.75e-01 100.0% 89.3%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.96e-01 87.7% 86.3%
4963411 101.1.2.938 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25947 0.53 29.0 3.69e-01 80.8% 95.7%
1567470 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 31.0 3.49e-01 89.2% 79.4%
4963635 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.50 23.0 3.06e-01 79.2% 79.7%