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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00224
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00224
Identity
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 311-437
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.54 | 22.0 | 3.03e-01 | 97.6% | 72.7% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.54 | 41.0 | 3.91e-01 | 100.0% | 66.9% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.53 | 39.0 | 4.07e-01 | 85.0% | 83.8% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 25.0 | 2.77e-01 | 91.3% | 52.0% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 26.0 | 2.96e-01 | 89.8% | 67.0% |
| 3viqA00 | 6.10.140.1020 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 32.0 | 3.31e-01 | 83.5% | 67.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3409778 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 33.0 | 3.37e-01 | 100.0% | 62.3% |
| 3266302 | 543.1.1.0 ↗ | few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related | 0.52 | 32.0 | 2.96e-01 | 78.7% | 45.6% |
| 4243212 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.52 | 40.0 | 2.53e-01 | 82.7% | 34.9% |
| 3574069 | 604.12.1.62 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA | 0.51 | 38.0 | 3.88e-01 | 81.1% | 78.4% |
| 3587631 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.51 | 38.0 | 3.71e-01 | 77.2% | 77.9% |
| 3627409 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.51 | 38.0 | 3.28e-01 | 77.2% | 73.0% |
| 3469940 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 41.0 | 3.33e-01 | 89.0% | 85.3% |
| 3974474 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.51 | 27.0 | 3.20e-01 | 100.0% | 73.3% |
| 3217417 | 5001.1.1.121 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TRAM_LAG1_CLN8 | 0.50 | 42.0 | 3.13e-01 | 92.1% | 66.2% |
D2
medium
residues 53-165
Domain cluster:
rep: IMGVR_UViG_2529293100_000004-2529293100-2531221071__D80-181
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13641.13 best | Glyco_tranf_2_3 | 46.1 | 7.10e-12 | 99.1% | 49.1% |
| PF00535.33 | Glycos_transf_2 | 113.4 | 1.50e-32 | 96.5% | 64.3% |
| PF10111.15 | Glyco_tranf_2_2 | 40.6 | 3.00e-10 | 94.7% | 37.7% |
D3
medium
residues 166-284
Domain cluster:
rep: PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00181__D133-224
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p02A02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.62 | 48.0 | 3.81e-01 | 93.3% | 40.9% |
| 1xhbA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 48.0 | 3.82e-01 | 92.4% | 46.1% |
| 1ffyA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 45.0 | 3.14e-01 | 87.4% | 72.6% |
| 1o14A02 | 2.20.150.10 | Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › putative 5-dehydro-2- deoxygluconokinase | 0.54 | 24.0 | 3.43e-01 | 95.0% | 92.5% |
| 3hxlA01 | 3.30.1490.360 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 26.0 | 3.30e-01 | 87.4% | 84.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590111 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.92 | 82.0 | 5.65e-01 | 100.0% | 32.4% |
| 3386014 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.80 | 68.0 | 4.94e-01 | 100.0% | 35.7% |
| 4954474 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.78 | 69.0 | 4.96e-01 | 100.0% | 35.2% |
| 3588591 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.77 | 70.0 | 5.51e-01 | 100.0% | 50.0% |
| 3385556 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.76 | 67.0 | 4.54e-01 | 100.0% | 27.4% |
| None | — | 0.74 | 68.0 | 4.72e-01 | 100.0% | 31.8% | |
| 3969561 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.72 | 58.0 | 4.25e-01 | 100.0% | 33.1% |
| 3518071 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.58 | 52.0 | 3.74e-01 | 100.0% | 60.6% |
| 3822784 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.51 | 33.0 | 3.68e-01 | 93.3% | 84.2% |