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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00261
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00261
Identity
- Kingdom:
- phage
Quality
71.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 111-207_309-375
Domain cluster:
rep: KX077889.1__ANM47364.1__X__00044__D161-256_351-422
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03816.20 best | LytR_cpsA_psr | 63.1 | 4.70e-17 | 57.3% | 52.7% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mptA01 | 3.30.420.590 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.88 | 76.0 | 7.56e-01 | 96.3% | 87.0% |
| 6uf3A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.86 | 79.0 | 6.64e-01 | 95.7% | 97.2% |
| 2xxpA02 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.83 | 77.0 | 6.35e-01 | 97.0% | 96.3% |
| 3okzB00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.82 | 76.0 | 6.08e-01 | 96.3% | 88.1% |
| 3pe5A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.79 | 75.0 | 6.13e-01 | 100.0% | 97.8% |
| 3nroA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.78 | 72.0 | 6.23e-01 | 96.3% | 97.9% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.74 | 67.0 | 5.61e-01 | 94.5% | 91.9% |
| 4c92A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 29.0 | 3.26e-01 | 93.3% | 60.0% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.53 | 24.0 | 2.98e-01 | 76.2% | 66.7% |
| 6jb7A01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 33.0 | 3.38e-01 | 96.3% | 64.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4034144 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.88 | 82.0 | 6.48e-01 | 96.3% | 84.3% |
| 4032281 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.87 | 81.0 | 6.59e-01 | 95.7% | 89.8% |
| 4233293 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.87 | 81.0 | 6.57e-01 | 96.3% | 91.1% |
| 3286073 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.86 | 81.0 | 6.37e-01 | 97.0% | 93.0% |
| 3589536 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.86 | 80.0 | 6.49e-01 | 96.3% | 87.1% |
| 3959704 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.86 | 72.0 | 6.00e-01 | 86.6% | 96.9% |
| 4608056 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.84 | 79.0 | 6.29e-01 | 96.3% | 83.7% |
| 3987489 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.84 | 76.0 | 6.14e-01 | 95.1% | 97.6% |
| 3954850 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.83 | 80.0 | 6.18e-01 | 100.0% | 93.8% |
| 3949794 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.83 | 76.0 | 6.10e-01 | 95.7% | 93.4% |
| 2529960 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.82 | 77.0 | 6.21e-01 | 97.0% | 91.5% |
| 3588485 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.82 | 75.0 | 6.31e-01 | 93.9% | 96.8% |
| 146943 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.82 | 75.0 | 6.11e-01 | 95.7% | 92.1% |
| 4398690 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.81 | 78.0 | 6.10e-01 | 100.0% | 94.6% |
| 119489 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.81 | 75.0 | 6.34e-01 | 96.3% | 90.8% |
| 1144695 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.74 | 67.0 | 5.61e-01 | 94.5% | 91.9% |
D2
medium
residues 208-308
Domain cluster:
rep: KX077889.1__ANM47364.1__X__00044__D257-350
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03816.20 best | LytR_cpsA_psr | 60.4 | 3.10e-16 | 82.2% | 51.3% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xxpA02 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.88 | 80.0 | 5.66e-01 | 100.0% | 35.7% |
| 6uf3A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.88 | 78.0 | 5.60e-01 | 100.0% | 37.0% |
| 3nroA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.86 | 69.0 | 5.08e-01 | 100.0% | 35.7% |
| 6mptA02 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.84 | 67.0 | 7.36e-01 | 97.0% | 100.0% |
| 3okzB00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.83 | 77.0 | 5.38e-01 | 100.0% | 34.6% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.80 | 74.0 | 5.41e-01 | 100.0% | 39.1% |
| 3pe5A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.78 | 72.0 | 5.12e-01 | 100.0% | 36.1% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.72 | 40.0 | 3.37e-01 | 80.2% | 33.5% |
| 1ndbA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.62 | 51.0 | 3.65e-01 | 86.1% | 75.7% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 28.0 | 3.45e-01 | 91.1% | 74.6% |
| 1twfB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.55 | 39.0 | 3.28e-01 | 74.3% | 92.1% |
| 6c1qB02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 39.0 | 2.93e-01 | 76.2% | 73.5% |
| 3vwaA03 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 39.0 | 2.84e-01 | 78.2% | 39.9% |
| 5e75A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 41.0 | 2.60e-01 | 83.2% | 97.6% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.51 | 37.0 | 2.81e-01 | 77.2% | 54.0% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.51 | 37.0 | 3.49e-01 | 86.1% | 60.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959704 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.90 | 86.0 | 6.10e-01 | 100.0% | 39.4% |
| 3949794 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.89 | 83.0 | 5.76e-01 | 100.0% | 34.1% |
| 3589536 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.89 | 79.0 | 5.52e-01 | 100.0% | 33.6% |
| 2529960 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.88 | 80.0 | 5.56e-01 | 100.0% | 33.9% |
| 3588485 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.87 | 78.0 | 5.62e-01 | 100.0% | 38.0% |
| 3286073 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.87 | 82.0 | 5.63e-01 | 100.0% | 34.0% |
| 4621397 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.86 | 79.0 | 5.52e-01 | 100.0% | 33.9% |
| 3954850 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.85 | 79.0 | 5.37e-01 | 100.0% | 30.9% |
| 4233293 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.83 | 78.0 | 5.50e-01 | 100.0% | 36.1% |
| 4032281 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.81 | 73.0 | 5.17e-01 | 100.0% | 34.9% |
| 1144695 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.80 | 74.0 | 5.41e-01 | 100.0% | 39.1% |
| 4034144 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.80 | 74.0 | 5.08e-01 | 100.0% | 32.7% |
| 3505043 | 102.1.3.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain | 0.60 | 39.0 | 3.37e-01 | 99.0% | 41.9% |
| 3250076 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.60 | 45.0 | 4.02e-01 | 78.2% | 80.7% |
| 4458552 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.58 | 39.0 | 2.96e-01 | 99.0% | 27.6% |
| 4158903 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.57 | 42.0 | 4.06e-01 | 76.2% | 77.4% |
| 3220241 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 41.0 | 2.77e-01 | 75.2% | 55.7% |
| 3740079 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.55 | 42.0 | 3.44e-01 | 81.2% | 83.8% |
| 3550428 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 40.0 | 2.85e-01 | 76.2% | 67.1% |
| 4680594 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.53 | 38.0 | 3.63e-01 | 73.3% | 73.0% |
| None | — | 0.51 | 43.0 | 3.08e-01 | 94.1% | 89.5% | |
| 3927673 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 37.0 | 2.58e-01 | 76.2% | 41.1% |
| None | — | 0.51 | 43.0 | 3.06e-01 | 94.1% | 89.5% |