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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00271

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00271

Identity

Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-160
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.78 56.0 6.25e-01 73.7% 100.0%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 31.0 2.76e-01 96.0% 35.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3966471 274.1.1.14 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComP_DUS 0.68 61.0 5.61e-01 99.0% 90.8%
4029641 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 41.0 2.89e-01 72.7% 59.7%
3710998 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 49.0 3.12e-01 97.0% 30.2%
5055279 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.52 47.0 3.67e-01 99.0% 87.3%
4961983 3755.1.1.32 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › ATP-synt_D 0.52 44.0 3.35e-01 91.9% 50.4%