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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00284

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00284

Identity

Kingdom:
phage

Quality

75.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 28-82
PDB
Domain cluster: representative
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.79 68.0 5.41e-01 100.0% 59.8%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.78 67.0 5.41e-01 100.0% 59.5%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.78 66.0 5.03e-01 98.2% 43.3%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.77 64.0 6.42e-01 94.5% 93.0%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 59.0 5.27e-01 92.7% 58.5%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.76 66.0 5.32e-01 100.0% 51.4%
1d2mA03 6.10.140.240 Special › Helix non-globular › Helix Hairpins › 0.73 58.0 5.53e-01 89.1% 74.2%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.71 61.0 5.36e-01 100.0% 65.4%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.70 60.0 4.65e-01 98.2% 69.8%
3w8hB00 1.10.12.70 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.70 55.0 5.21e-01 92.7% 72.7%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.70 52.0 4.53e-01 83.6% 53.1%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.70 58.0 4.64e-01 96.4% 100.0%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 61.0 4.88e-01 100.0% 72.7%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.69 50.0 4.97e-01 78.2% 86.2%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.67 56.0 4.91e-01 96.4% 67.4%
5u1aL00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 56.0 4.05e-01 96.4% 36.7%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.67 56.0 5.48e-01 96.4% 90.0%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 55.0 4.72e-01 98.2% 56.8%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.66 56.0 5.41e-01 96.4% 84.4%
3e6sA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 55.0 4.10e-01 100.0% 70.4%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 56.0 4.55e-01 100.0% 93.8%
4iw9A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 58.0 4.61e-01 100.0% 61.9%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 55.0 3.90e-01 96.4% 31.3%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 56.0 4.95e-01 96.4% 80.2%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.66 56.0 4.22e-01 98.2% 43.3%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.65 49.0 4.34e-01 92.7% 54.2%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.65 55.0 3.67e-01 96.4% 61.1%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 55.0 4.85e-01 100.0% 78.2%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 51.0 4.09e-01 87.3% 51.8%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.65 54.0 3.73e-01 96.4% 27.5%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.64 52.0 4.68e-01 89.1% 76.3%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.64 47.0 4.00e-01 80.0% 96.8%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.64 47.0 3.83e-01 89.1% 40.7%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 54.0 5.23e-01 94.5% 91.9%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 51.0 4.23e-01 89.1% 66.3%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 55.0 4.24e-01 98.2% 43.1%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 51.0 3.59e-01 94.5% 83.3%
2fonA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 54.0 4.19e-01 100.0% 87.6%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.63 54.0 4.77e-01 96.4% 93.8%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 3.64e-01 92.7% 29.6%
1aluA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 52.0 3.84e-01 96.4% 33.1%
3e0sA00 1.40.20.10 Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain 0.63 53.0 3.43e-01 100.0% 34.8%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 51.0 3.90e-01 100.0% 77.6%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.63 56.0 5.30e-01 100.0% 98.5%
1f6fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 54.0 3.84e-01 100.0% 83.6%
3u4qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 52.0 3.50e-01 98.2% 32.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 53.0 4.74e-01 100.0% 68.4%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 51.0 4.78e-01 96.4% 87.3%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 54.0 5.20e-01 100.0% 96.8%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.62 49.0 4.22e-01 98.2% 56.9%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.61 51.0 4.74e-01 100.0% 77.3%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 53.0 4.56e-01 98.2% 64.4%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 50.0 4.94e-01 94.5% 96.6%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 51.0 4.94e-01 100.0% 92.2%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 46.0 4.41e-01 89.1% 88.1%
3fmcC01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 49.0 3.15e-01 100.0% 18.3%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 3.85e-01 96.4% 50.8%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.58 46.0 3.89e-01 100.0% 49.5%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 50.0 4.82e-01 98.2% 84.1%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 49.0 3.89e-01 100.0% 48.7%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 46.0 3.77e-01 94.5% 50.4%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.56 48.0 4.58e-01 100.0% 81.8%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 46.0 3.70e-01 92.7% 46.8%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.56 48.0 4.72e-01 100.0% 93.4%
8d8lN01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 37.0 3.37e-01 85.5% 53.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3447846 5010.1.1.6 extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › SPC12 0.94 74.0 7.94e-01 83.6% 95.8%
5054586 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.92 82.0 6.47e-01 96.4% 50.5%
3189791 601.19.1.18 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C 0.88 79.0 5.11e-01 100.0% 23.9%
3965046 604.12.1.76 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA 0.88 68.0 6.28e-01 83.6% 67.1%
3630756 5043.1.1.2 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 0.86 79.0 7.22e-01 100.0% 78.6%
4940089 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.84 73.0 5.76e-01 96.4% 51.8%
3591320 5043.1.1.2 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 0.82 70.0 6.52e-01 98.2% 75.7%
5082622 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.82 69.0 5.92e-01 100.0% 60.0%
4993526 101.11.1.13 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › EMC6_arch 0.81 67.0 5.79e-01 100.0% 59.1%
5004053 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.80 68.0 5.59e-01 96.4% 60.0%
5047182 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 69.0 6.59e-01 98.2% 86.2%
5073064 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.79 61.0 5.87e-01 87.3% 73.8%
3736234 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.77 62.0 5.27e-01 89.1% 54.4%
4211233 4120.1.1.60 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › GlutR_dimer 0.77 67.0 5.98e-01 100.0% 82.5%
3697477 7581.1.1.7 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C 0.77 67.0 4.08e-01 100.0% 25.0%
4295625 5043.1.1.0 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.77 62.0 6.13e-01 92.7% 85.0%
4982694 3843.1.1.35 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF1634 0.76 65.0 5.41e-01 98.2% 70.4%
4082855 106.1.1.4 alpha arrays › Globin-like › Globin-like › Globin-like › Rsbr_N 0.75 62.0 4.68e-01 100.0% 37.1%
4592728 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.75 61.0 5.29e-01 96.4% 56.7%
4942761 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.75 62.0 5.53e-01 100.0% 63.5%
3396806 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 63.0 5.40e-01 96.4% 62.2%
3482882 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.73 62.0 6.11e-01 96.4% 91.7%
3216427 3542.1.1.1 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin 0.73 62.0 3.94e-01 98.2% 18.8%
3718013 621.1.1.7 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 0.73 62.0 5.28e-01 100.0% 65.3%
3812703 3758.1.1.7 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 0.72 62.0 4.17e-01 100.0% 29.6%
3597909 5094.1.1.0 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.72 62.0 4.91e-01 100.0% 73.3%
3225166 3447.1.1.2 alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ICMT 0.71 61.0 3.88e-01 98.2% 29.0%
3725377 192.15.1.44 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 0.71 60.0 5.13e-01 96.4% 61.1%
3284949 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.71 61.0 5.62e-01 96.4% 84.3%
5079588 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.71 60.0 5.19e-01 100.0% 60.0%
3170882 603.1.1.210 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Tmemb_170 0.70 58.0 4.63e-01 98.2% 46.7%
4401833 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 57.0 4.80e-01 94.5% 53.0%
3979729 3755.3.1.500 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › IpaC_SipC 0.69 59.0 4.56e-01 96.4% 65.8%
5074552 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.67 53.0 4.24e-01 89.1% 44.3%
3947564 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.67 57.0 5.44e-01 100.0% 95.4%
5078048 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 52.0 4.74e-01 85.5% 64.0%
5045248 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.67 53.0 4.67e-01 89.1% 60.0%
3586032 605.1.1.237 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Patched 0.66 58.0 4.71e-01 100.0% 56.2%
2833148 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.66 52.0 4.24e-01 92.7% 44.3%
3690980 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.64 52.0 4.35e-01 98.2% 49.5%
3837404 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 55.0 4.27e-01 100.0% 44.6%
2557383 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.64 51.0 4.06e-01 96.4% 41.5%
3497897 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.64 53.0 4.99e-01 96.4% 81.4%
3626122 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 54.0 5.33e-01 96.4% 98.3%
3269970 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.63 50.0 4.19e-01 92.7% 48.6%
5028679 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 52.0 4.32e-01 98.2% 68.0%
5065508 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.62 52.0 4.31e-01 96.4% 67.0%
3977114 5069.1.1.2 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.61 51.0 3.41e-01 96.4% 24.4%
D2 medium residues 109-187
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.82 54.0 5.10e-01 74.7% 56.8%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 50.0 4.87e-01 70.9% 58.1%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 55.0 4.89e-01 75.9% 53.2%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.76 51.0 4.46e-01 70.9% 47.0%
4pq0A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 46.0 4.40e-01 70.9% 52.7%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 50.0 4.53e-01 70.9% 52.9%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 48.0 3.82e-01 75.9% 34.6%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 53.0 4.26e-01 86.1% 40.1%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 48.0 4.23e-01 70.9% 55.6%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 55.0 4.61e-01 84.8% 59.5%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 48.0 4.76e-01 79.7% 72.3%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 48.0 4.14e-01 79.7% 49.2%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.64 45.0 3.86e-01 74.7% 66.4%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 3.61e-01 72.2% 49.3%
6sshA01 3.40.50.11210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP 0.62 43.0 3.30e-01 72.2% 33.5%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.62e-01 73.4% 42.0%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 41.0 3.46e-01 72.2% 40.9%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 43.0 3.40e-01 72.2% 50.6%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 41.0 3.67e-01 74.7% 85.5%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 41.0 3.44e-01 75.9% 75.9%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.35e-01 77.2% 43.1%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 40.0 2.68e-01 73.4% 20.1%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.99e-01 89.9% 56.9%
2b5xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 40.0 3.29e-01 74.7% 80.4%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.56 41.0 3.18e-01 79.7% 99.5%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 3.98e-01 79.7% 84.4%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 38.0 3.35e-01 74.7% 50.8%
3hn5A02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 3.27e-01 70.9% 94.8%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 38.0 3.46e-01 75.9% 82.8%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.34e-01 77.2% 80.8%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.30e-01 75.9% 71.1%
2jtdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.16e-01 70.9% 64.8%
2zplB00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 36.0 3.46e-01 70.9% 77.7%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.40e-01 73.4% 86.7%
2w59B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.34e-01 74.7% 86.0%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.52 36.0 2.90e-01 73.4% 95.3%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.52 37.0 3.41e-01 74.7% 65.3%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.30e-01 83.5% 96.5%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 35.0 3.06e-01 70.9% 67.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 37.0 3.14e-01 78.5% 80.0%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 35.0 3.09e-01 72.2% 86.6%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 35.0 2.53e-01 73.4% 39.8%
1dikA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 36.0 2.97e-01 75.9% 73.9%
5lf5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.27e-01 70.9% 91.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4967706 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.93 64.0 5.20e-01 70.9% 42.5%
5066631 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.89 63.0 5.59e-01 73.4% 54.3%
5039031 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.88 62.0 5.42e-01 72.2% 51.8%
4976922 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.86 60.0 5.88e-01 72.2% 67.1%
4192693 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.83 58.0 5.65e-01 73.4% 67.1%
3290300 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.82 58.0 5.70e-01 73.4% 69.4%
4964806 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.81 76.0 5.87e-01 100.0% 51.2%
4931272 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.81 64.0 6.00e-01 83.5% 71.6%
4032882 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.81 62.0 5.81e-01 81.0% 67.7%
4941253 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.80 59.0 5.37e-01 75.9% 63.0%
4986577 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.80 52.0 4.59e-01 70.9% 47.3%
3846404 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.79 57.0 4.48e-01 75.9% 39.3%
4034140 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.79 55.0 5.35e-01 74.7% 67.1%
3283795 220.1.1.17 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.79 54.0 4.69e-01 72.2% 48.7%
4950192 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.78 57.0 5.57e-01 81.0% 70.6%
3500713 220.1.1.56 beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.78 50.0 4.24e-01 72.2% 41.6%
3224815 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 56.0 4.89e-01 75.9% 53.9%
4112170 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.77 56.0 4.58e-01 81.0% 42.9%
5001377 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 53.0 5.25e-01 72.2% 85.9%
3956055 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.77 51.0 4.56e-01 70.9% 49.1%
4122019 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.77 53.0 4.60e-01 70.9% 50.4%
4032084 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.76 60.0 5.64e-01 87.3% 70.5%
4041551 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.76 53.0 4.53e-01 72.2% 48.3%
135359 220.1.1.17 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.75 52.0 4.40e-01 72.2% 44.8%
3508084 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.75 54.0 5.27e-01 74.7% 70.6%
5054847 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.75 53.0 4.54e-01 73.4% 55.0%
5025053 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 61.0 5.04e-01 87.3% 51.9%
4019290 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.74 51.0 4.40e-01 70.9% 48.3%
4063575 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.73 51.0 4.47e-01 72.2% 50.4%
3929366 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.73 49.0 4.44e-01 83.5% 52.4%
3349450 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.72 50.0 4.35e-01 72.2% 47.5%
3494766 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 49.0 4.63e-01 70.9% 58.9%
3864513 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 54.0 4.61e-01 79.7% 54.4%
4564186 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 51.0 4.28e-01 74.7% 47.2%
3572707 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 49.0 4.17e-01 72.2% 46.4%
3240914 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 48.0 4.52e-01 72.2% 60.0%
4964695 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.69 48.0 4.12e-01 73.4% 48.8%
5044748 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 45.0 4.07e-01 70.9% 50.5%
3750304 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 48.0 4.14e-01 73.4% 48.3%
3312151 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 54.0 4.34e-01 92.4% 45.2%
3905168 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 50.0 4.20e-01 81.0% 48.5%
3718300 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 46.0 4.78e-01 75.9% 78.7%
3601880 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.66 47.0 4.01e-01 75.9% 50.0%
3705853 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 48.0 3.69e-01 75.9% 37.6%
3958688 2484.3.1.1 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.66 45.0 3.87e-01 70.9% 91.2%
3869434 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 46.0 3.93e-01 79.7% 46.2%
3998515 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 47.0 3.80e-01 84.8% 40.0%
3175837 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 42.0 3.46e-01 74.7% 38.7%
3249874 220.1.1.28 beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.56 43.0 3.50e-01 86.1% 57.5%
3991351 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.55 45.0 3.78e-01 97.5% 50.3%
3169644 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 44.0 3.59e-01 92.4% 75.0%
4064637 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.76e-01 97.5% 97.2%
3870421 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 44.0 3.47e-01 92.4% 68.0%
3849761 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.06e-01 100.0% 51.4%
4562453 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.51 36.0 3.42e-01 74.7% 76.0%
3286982 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.50 36.0 3.34e-01 75.9% 73.1%
3062973 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.50 35.0 2.37e-01 83.5% 18.0%