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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00308

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00308

Identity

Kingdom:
phage

Quality

56.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-72
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 43.0 3.36e-01 100.0% 89.3%
3e07A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 37.0 3.44e-01 75.8% 92.2%
2k47A00 1.10.8.440 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Vesicular stomatitis virus phosphoprotein C-terminal domain 0.53 36.0 3.50e-01 71.2% 97.3%
4gniA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 32.0 3.38e-01 90.9% 70.2%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 4.00e-01 100.0% 92.0%
5jzxD02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 40.0 3.13e-01 86.4% 45.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932190 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.62 34.0 4.32e-01 80.3% 100.0%
3591359 4261.1.1.2 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.55 36.0 2.73e-01 72.7% 29.3%
3788897 309.1.1.2 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.54 38.0 2.13e-01 74.2% 15.7%
3614204 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 2.71e-01 72.7% 86.5%
3264775 2002.1.1.106 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.53 44.0 2.79e-01 90.9% 27.6%
4111708 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.51 38.0 2.70e-01 80.3% 46.8%
D2 high residues 85-120_135-283
PDB
D3 high residues 386-488
PDB
Domain cluster: representative
D4 high residues 551-632
PDB
D5 medium residues 286-353
PDB