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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00311

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00311

Identity

Kingdom:
phage

Quality

73.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-34
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.71 57.0 3.65e-01 100.0% 28.1%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.69 49.0 3.39e-01 79.4% 21.8%
4lurA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.67 49.0 2.97e-01 82.4% 11.7%
3lhoA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.67 47.0 2.93e-01 85.3% 36.4%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 46.0 3.10e-01 79.4% 18.0%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.65 47.0 3.54e-01 82.4% 29.5%
2d44A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 43.0 2.54e-01 70.6% 7.8%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 43.0 3.15e-01 73.5% 25.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 3.71e-01 82.4% 64.0%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.61 43.0 3.72e-01 79.4% 50.8%
3abgB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.60 46.0 3.08e-01 88.2% 81.5%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.58 40.0 3.35e-01 73.5% 33.3%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.15e-01 73.5% 27.8%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.58 40.0 3.42e-01 85.3% 39.1%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 40.0 2.72e-01 79.4% 15.7%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.22e-01 76.5% 28.3%
1zoyA04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.54 38.0 3.29e-01 73.5% 43.1%
3syjA02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 36.0 2.01e-01 70.6% 4.1%
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 38.0 2.32e-01 76.5% 23.8%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.52 36.0 3.66e-01 76.5% 74.3%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.51 34.0 3.19e-01 73.5% 49.1%
6we5A00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.50 34.0 2.33e-01 88.2% 15.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4417756 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.77 53.0 3.96e-01 73.5% 29.4%
5038619 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.69 47.0 2.62e-01 70.6% 5.3%
3327738 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 45.0 2.86e-01 76.5% 94.5%
5029710 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 46.0 2.81e-01 85.3% 10.9%
3368713 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.63 43.0 3.58e-01 88.2% 36.0%
4942677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 3.50e-01 73.5% 33.3%
3391894 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.60 44.0 3.67e-01 79.4% 38.6%
4030232 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.58 45.0 2.66e-01 100.0% 13.9%
3266378 5.1.4.239 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Dicty_CTDC 0.56 40.0 3.74e-01 76.5% 57.8%
5078734 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.56 38.0 3.65e-01 85.3% 56.0%
4953690 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.55 44.0 3.01e-01 91.2% 35.7%
5030944 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 38.0 3.61e-01 73.5% 55.6%
3993494 5.1.5.42 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RMC1_N 0.52 35.0 2.19e-01 85.3% 10.2%
5076421 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 38.0 2.49e-01 88.2% 49.2%