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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00347
Bact-VirSRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00347
Identity
- Kingdom:
- phage
Quality
70.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 64-183
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.70 | 44.0 | 4.68e-01 | 86.7% | 70.8% |
| 3mzwA03 | 3.80.20.20 | Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain | 0.60 | 48.0 | 4.31e-01 | 85.8% | 72.0% |
| 3w4sA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 45.0 | 3.55e-01 | 100.0% | 88.3% |
| 2nutB04 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 44.0 | 3.64e-01 | 97.5% | 96.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964741 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.75 | 46.0 | 5.25e-01 | 85.0% | 82.2% |
| 4375312 | 207.2.1.106 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › TPS, Fil_haemagg_2 | 0.68 | 54.0 | 3.57e-01 | 85.8% | 21.7% |
| 2163978 | 207.10.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding | 0.68 | 52.0 | 4.07e-01 | 86.7% | 39.9% |
| 4012012 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.67 | 45.0 | 4.93e-01 | 85.8% | 83.0% |
| 3236384 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.56 | 45.0 | 3.82e-01 | 86.7% | 74.0% |
| 5067851 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.55 | 49.0 | 3.52e-01 | 98.3% | 42.0% |
D2
high
residues 187-405
Domain cluster:
representative
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082073 | 207.10.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding | 0.77 | 50.0 | 5.07e-01 | 100.0% | 65.5% |
| 2163978 | 207.10.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding | 0.75 | 50.0 | 4.87e-01 | 100.0% | 61.8% |
| 2410150 | 207.10.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding | 0.72 | 50.0 | 4.80e-01 | 100.0% | 62.7% |
| 5005047 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.67 | 36.0 | 4.44e-01 | 90.9% | 80.7% |
| 4965634 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.64 | 35.0 | 4.52e-01 | 90.4% | 90.0% |
D3
high
residues 424-541
Domain cluster:
rep: SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00346__D1316-1349_1365-1454
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12892.14 best | FctA | 41.0 | 4.40e-10 | 96.6% | 98.3% |
D4
medium
residues 1-63