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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00432

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00432

Identity

Kingdom:
phage

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-90
PDB
Domain cluster: rep: NC_041845.1__YP_009591153.1__FDG55_gp67__00067__D18-34_85-130
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ekjA01 2.60.40.1500 Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 0.57 42.0 3.45e-01 80.8% 91.6%
3glaA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 37.0 3.51e-01 70.5% 96.9%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.60e-01 79.5% 82.2%
3clwC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 38.0 3.55e-01 74.4% 90.0%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 3.91e-01 76.9% 98.8%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 35.0 3.28e-01 100.0% 53.7%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 40.0 3.04e-01 82.1% 67.8%
1gmeA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 2.88e-01 70.5% 66.7%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.32e-01 80.8% 91.5%
1fsuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 40.0 3.61e-01 82.1% 73.1%
1x5mA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.25e-01 71.8% 79.2%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 44.0 3.07e-01 96.2% 75.9%
6ewnA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 3.20e-01 70.5% 97.0%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 43.0 3.74e-01 96.2% 78.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4953347 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.64 32.0 3.88e-01 70.5% 74.0%
4953384 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 38.0 3.47e-01 70.5% 92.4%
4034242 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 41.0 3.39e-01 78.2% 91.4%
4293664 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 37.0 3.11e-01 71.8% 69.6%
3720771 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 36.0 2.96e-01 70.5% 67.7%
3609985 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 37.0 3.16e-01 73.1% 76.3%
3309018 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 38.0 3.12e-01 75.6% 86.0%
4962569 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 37.0 3.01e-01 71.8% 65.5%
3464766 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 37.0 3.15e-01 74.4% 83.7%
3706744 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.53 40.0 3.44e-01 97.4% 51.2%
3256071 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 36.0 3.06e-01 71.8% 70.4%
3632843 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 36.0 2.90e-01 71.8% 68.4%
5033186 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 38.0 3.10e-01 75.6% 89.5%
3530658 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 35.0 3.15e-01 71.8% 74.8%
4180426 11.1.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.51 35.0 3.48e-01 73.1% 68.2%
3861702 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.50 37.0 3.02e-01 80.8% 89.4%
D2 high residues 95-149
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5e7gA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.48e-01 83.6% 80.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1828351 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.52 39.0 3.47e-01 83.6% 79.8%
2790638 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.50 36.0 3.32e-01 83.6% 77.1%