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SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00456

Bact-Vir

SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00456

Identity

Kingdom:
phage

Quality

78.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-138
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.63 35.0 3.98e-01 84.7% 70.6%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 32.0 3.60e-01 84.0% 63.2%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.53 40.0 3.59e-01 77.9% 81.8%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 29.0 3.26e-01 71.0% 70.3%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.51 36.0 3.21e-01 74.0% 70.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404343 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.63 35.0 4.12e-01 71.8% 77.8%
3281670 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.55 41.0 3.84e-01 80.2% 62.9%
3856774 110.1.1.18 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.54 31.0 2.93e-01 96.2% 47.1%
5043021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 29.0 3.46e-01 70.2% 78.9%
4930335 101.1.2.385 ↗ alpha arrays › HTH › HTH › winged helix domain › HRQ1_WHD 0.52 27.0 3.55e-01 77.9% 98.5%