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SRR1747018_scaffold_396_prodigal-single.1__X__X__00002
Bact-VirSRR1747018_scaffold_396_prodigal-single.1__X__X__00002
Identity
- Kingdom:
- phage
Quality
73.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-209
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u0cA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.79 | 40.0 | 4.66e-01 | 97.6% | 66.9% |
| 4jioA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.79 | 39.0 | 4.50e-01 | 97.1% | 64.0% |
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 42.0 | 4.65e-01 | 100.0% | 66.1% |
| 2dnxA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 45.0 | 5.53e-01 | 74.0% | 92.3% |
| 2nrjA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.76 | 54.0 | 4.56e-01 | 72.6% | 72.4% |
| 6grjB01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.75 | 54.0 | 4.65e-01 | 72.6% | 85.3% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.74 | 56.0 | 5.68e-01 | 99.5% | 78.8% |
| 5j1gA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 47.0 | 4.57e-01 | 70.7% | 57.5% |
| 3c1yA02 | 1.20.1260.110 | Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region | 0.71 | 41.0 | 4.84e-01 | 90.4% | 80.4% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.70 | 45.0 | 5.54e-01 | 74.0% | 100.0% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.70 | 33.0 | 3.50e-01 | 76.9% | 48.2% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 30.0 | 3.90e-01 | 85.1% | 68.9% |
| 1bf5A01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.69 | 54.0 | 5.91e-01 | 98.1% | 100.0% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 48.0 | 5.18e-01 | 77.4% | 86.7% |
| 2i2oA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 33.0 | 3.35e-01 | 96.2% | 47.4% |
| 3pjaJ01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.64 | 40.0 | 4.89e-01 | 88.0% | 97.7% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.64 | 51.0 | 5.08e-01 | 92.3% | 80.0% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.63 | 51.0 | 5.16e-01 | 90.4% | 83.7% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.63 | 47.0 | 5.23e-01 | 92.3% | 100.0% |
| 1y1uA01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.61 | 54.0 | 5.58e-01 | 100.0% | 100.0% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.58 | 44.0 | 4.94e-01 | 84.6% | 99.4% |
| 5azpB01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.58 | 49.0 | 4.10e-01 | 91.3% | 80.8% |
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.57 | 42.0 | 4.31e-01 | 75.5% | 96.5% |
| 4d0nB01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.57 | 46.0 | 4.41e-01 | 92.8% | 73.5% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 38.0 | 3.61e-01 | 96.2% | 57.6% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.56 | 45.0 | 4.72e-01 | 83.7% | 91.4% |
| 3i2wA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 41.0 | 3.80e-01 | 75.5% | 90.3% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 28.0 | 3.21e-01 | 76.9% | 63.8% |
| 2lquA01 | 1.20.1420.40 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein | 0.54 | 33.0 | 3.81e-01 | 89.9% | 79.9% |
| 1qoyA00 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.54 | 46.0 | 4.07e-01 | 89.9% | 79.9% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.54 | 32.0 | 3.91e-01 | 100.0% | 89.0% |
| 6xj1A01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.54 | 40.0 | 3.80e-01 | 76.0% | 94.7% |
| 7xk2R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 41.0 | 3.77e-01 | 93.3% | 60.8% |
| 4im0A04 | 1.20.1270.420 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 40.0 | 3.82e-01 | 76.0% | 87.8% |
| 3syvA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 40.0 | 3.75e-01 | 76.0% | 90.6% |
| 2ptqA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.53 | 48.0 | 4.33e-01 | 96.6% | 78.8% |
| 2d1lA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 39.0 | 3.64e-01 | 75.0% | 89.2% |
| 2wdqD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.51 | 27.0 | 3.70e-01 | 76.4% | 100.0% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.51 | 39.0 | 3.69e-01 | 77.4% | 92.2% |
| 2pfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.51 | 45.0 | 4.20e-01 | 95.2% | 82.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4387572 | 603.1.1.201 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › AflR | 0.74 | 53.0 | 5.64e-01 | 91.3% | 83.9% |
| 3260458 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.73 | 60.0 | 5.73e-01 | 95.2% | 74.2% |
| 5048524 | 133.2.1.1 ↗ | alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like › FTCD_C | 0.73 | 57.0 | 5.63e-01 | 99.5% | 77.7% |
| 3535223 | 604.37.1.2 ↗ | alpha bundles › Spectrin repeat-like › Legionella effector Lem22 › Legionella effector Lem22 › CCDC136_middle | 0.71 | 50.0 | 5.67e-01 | 70.2% | 99.4% |
| 3841137 | 109.4.1.662 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MEKK4_N | 0.70 | 49.0 | 4.88e-01 | 89.4% | 68.2% |
| 3848155 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.68 | 46.0 | 4.62e-01 | 70.2% | 67.1% |
| 3694749 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.67 | 38.0 | 3.53e-01 | 97.6% | 44.3% |
| 5043292 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 47.0 | 4.84e-01 | 72.1% | 80.5% |
| 3261432 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.66 | 55.0 | 5.50e-01 | 93.8% | 85.6% |
| 3784094 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.65 | 50.0 | 4.55e-01 | 90.9% | 60.4% |
| 3441563 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.64 | 41.0 | 4.45e-01 | 71.2% | 73.3% |
| 3554294 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.64 | 57.0 | 5.84e-01 | 94.7% | 100.0% |
| 3955485 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.63 | 43.0 | 3.83e-01 | 71.6% | 48.3% |
| 3539186 | 3187.1.1.0 ↗ | alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein | 0.63 | 50.0 | 4.35e-01 | 82.2% | 61.0% |
| 4021392 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.62 | 53.0 | 4.60e-01 | 90.4% | 70.0% |
| 3730963 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 51.0 | 4.05e-01 | 90.4% | 54.8% |
| 3251378 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.60 | 48.0 | 4.76e-01 | 82.2% | 91.2% |
| 3721981 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.60 | 50.0 | 4.85e-01 | 88.5% | 89.4% |
| 3615355 | 603.6.1.3 ↗ | alpha bundles › STAT-like › MukF C-terminal domain-like › MukF C-terminal domain-like › DUF4456 | 0.59 | 52.0 | 5.13e-01 | 95.7% | 89.0% |
| 3710041 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.59 | 41.0 | 3.92e-01 | 92.3% | 61.3% |
| 3477777 | 4177.1.1.12 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAM92 | 0.59 | 43.0 | 4.13e-01 | 74.5% | 83.4% |
| 4002559 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.58 | 40.0 | 3.96e-01 | 93.3% | 64.9% |
| 3785360 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 44.0 | 3.21e-01 | 80.8% | 35.6% |
| 3227233 | 4177.1.1.3 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Arfaptin | 0.57 | 41.0 | 3.83e-01 | 74.0% | 76.5% |
| 3721099 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 41.0 | 3.53e-01 | 99.0% | 46.5% |
| 3739377 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.56 | 41.0 | 3.56e-01 | 74.0% | 84.1% |
| 3680657 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 41.0 | 3.20e-01 | 75.0% | 49.9% |
| 3363809 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.55 | 41.0 | 3.79e-01 | 75.5% | 79.6% |
| 3914657 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 41.0 | 4.11e-01 | 75.5% | 91.4% |
| 3509307 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 41.0 | 4.41e-01 | 92.8% | 89.7% |
| 3697705 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.53 | 37.0 | 3.89e-01 | 79.8% | 76.8% |
| 4540510 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.52 | 36.0 | 4.02e-01 | 85.1% | 86.5% |
| 3066555 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.51 | 44.0 | 4.03e-01 | 100.0% | 69.9% |