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SRR1747018_scaffold_396_prodigal-single.1__X__X__00071
Bact-VirSRR1747018_scaffold_396_prodigal-single.1__X__X__00071
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-76
Domain cluster:
rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00054__D9-86
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yzsA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.92 | 86.0 | 8.35e-01 | 100.0% | 91.3% |
| 7mi4A02 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.91 | 85.0 | 8.53e-01 | 98.6% | 100.0% |
| 7cr6D01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.90 | 83.0 | 7.99e-01 | 98.6% | 91.5% |
| 7kfuC01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.89 | 84.0 | 8.35e-01 | 100.0% | 100.0% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.87 | 81.0 | 7.79e-01 | 100.0% | 91.5% |
| 8d3lA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.86 | 79.0 | 7.41e-01 | 100.0% | 85.2% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.83 | 78.0 | 7.37e-01 | 100.0% | 88.1% |
| 4w8kA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.83 | 77.0 | 7.10e-01 | 100.0% | 81.3% |
| 5fclE01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.75 | 68.0 | 6.31e-01 | 100.0% | 85.6% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.71 | 54.0 | 4.36e-01 | 100.0% | 43.5% |
| 4phtY02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.69 | 45.0 | 4.81e-01 | 75.3% | 79.0% |
| 2rrfA00 | 2.30.29.160 | Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal | 0.67 | 47.0 | 3.80e-01 | 72.6% | 74.5% |
| 3h09B02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.66 | 57.0 | 3.45e-01 | 97.3% | 23.7% |
| 6bygA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 54.0 | 3.46e-01 | 95.9% | 46.3% |
| 6ddtA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 53.0 | 3.38e-01 | 94.5% | 42.3% |
| 5n6uA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 53.0 | 3.41e-01 | 94.5% | 43.8% |
| 1x2jA00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.62 | 47.0 | 3.10e-01 | 79.5% | 89.3% |
| 5z62B02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.62 | 47.0 | 3.89e-01 | 83.6% | 92.6% |
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 53.0 | 4.50e-01 | 100.0% | 73.4% |
| 3i6dA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 54.0 | 4.26e-01 | 100.0% | 94.3% |
| 5tkwA02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.61 | 43.0 | 4.50e-01 | 78.1% | 81.8% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 47.0 | 4.31e-01 | 83.6% | 94.8% |
| 2c1lA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.61 | 55.0 | 4.03e-01 | 100.0% | 70.7% |
| 1w97L02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.61 | 48.0 | 4.84e-01 | 87.7% | 84.0% |
| 1gsaA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 50.0 | 4.23e-01 | 94.5% | 91.4% |
| 3ruiA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 52.0 | 3.44e-01 | 100.0% | 44.8% |
| 2qh9A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.59 | 52.0 | 3.95e-01 | 100.0% | 75.3% |
| 3evtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 52.0 | 4.38e-01 | 100.0% | 66.7% |
| 3kzhB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 49.0 | 3.26e-01 | 100.0% | 67.8% |
| 4pq0A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 47.0 | 4.36e-01 | 93.2% | 83.9% |
| 7x3hA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 44.0 | 3.56e-01 | 86.3% | 74.1% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 46.0 | 4.15e-01 | 93.2% | 84.3% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 43.0 | 4.63e-01 | 82.2% | 98.4% |
| 4gj1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 46.0 | 3.31e-01 | 95.9% | 40.6% |
| 3f8dA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 48.0 | 4.05e-01 | 97.3% | 61.8% |
| 5ysqB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 48.0 | 3.26e-01 | 100.0% | 70.7% |
| 4yy8A02 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.54 | 48.0 | 3.18e-01 | 98.6% | 84.6% |
| 6xigA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 45.0 | 3.09e-01 | 98.6% | 49.5% |
| 2dgdA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 45.0 | 3.84e-01 | 100.0% | 86.8% |
| 1vw4F02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 41.0 | 3.88e-01 | 86.3% | 90.2% |
| 1jceA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 43.0 | 3.44e-01 | 94.5% | 96.1% |
| 2p9mB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 29.0 | 2.52e-01 | 100.0% | 31.0% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2124247 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.99 | 96.0 | 7.41e-01 | 100.0% | 53.6% |
| 1723569 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.98 | 95.0 | 6.05e-01 | 100.0% | 26.0% |
| 3385541 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.98 | 95.0 | 6.00e-01 | 100.0% | 25.5% |
| 4405603 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.97 | 93.0 | 5.91e-01 | 100.0% | 25.1% |
| 4928071 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.94 | 90.0 | 5.67e-01 | 100.0% | 23.9% |
| 4046811 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.94 | 90.0 | 5.64e-01 | 100.0% | 24.0% |
| 4524600 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.94 | 89.0 | 5.54e-01 | 100.0% | 22.4% |
| 5004081 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.94 | 89.0 | 5.58e-01 | 100.0% | 23.1% |
| 4661121 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.93 | 89.0 | 5.64e-01 | 100.0% | 25.0% |
| 4928788 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.93 | 89.0 | 5.53e-01 | 100.0% | 22.6% |
| 4041865 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.93 | 89.0 | 5.49e-01 | 100.0% | 21.8% |
| 5083087 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.93 | 88.0 | 5.41e-01 | 100.0% | 27.0% |
| 4569627 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.93 | 84.0 | 5.31e-01 | 94.5% | 23.5% |
| 4498918 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.93 | 88.0 | 5.44e-01 | 100.0% | 21.9% |
| 4996324 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 88.0 | 5.46e-01 | 100.0% | 22.1% |
| 4947563 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 87.0 | 5.41e-01 | 100.0% | 22.7% |
| 4495021 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 87.0 | 5.34e-01 | 100.0% | 22.5% |
| 4649506 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 87.0 | 5.48e-01 | 100.0% | 23.8% |
| 5009925 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 86.0 | 5.45e-01 | 100.0% | 23.6% |
| 4392322 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 85.0 | 5.44e-01 | 98.6% | 24.3% |
| 4933934 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 84.0 | 5.25e-01 | 97.3% | 22.5% |
| 2798015 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 86.0 | 5.28e-01 | 100.0% | 20.7% |
| 4949685 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 86.0 | 5.43e-01 | 100.0% | 23.9% |
| 4346702 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.90 | 85.0 | 5.31e-01 | 100.0% | 24.2% |
| 4666911 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.90 | 85.0 | 5.35e-01 | 100.0% | 22.8% |
| 4542362 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.90 | 85.0 | 5.31e-01 | 100.0% | 22.5% |
| 4088587 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.90 | 85.0 | 5.38e-01 | 100.0% | 24.3% |
| 2728118 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.90 | 84.0 | 5.29e-01 | 100.0% | 24.5% |
| 4438458 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.90 | 84.0 | 5.21e-01 | 100.0% | 25.4% |
| 5037669 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 83.0 | 5.28e-01 | 100.0% | 23.2% |
| 2816212 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 84.0 | 5.23e-01 | 100.0% | 22.0% |
| 4486492 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 83.0 | 5.21e-01 | 100.0% | 22.7% |
| 1041203 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 82.0 | 5.22e-01 | 100.0% | 23.5% |
| 4096065 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.88 | 83.0 | 5.19e-01 | 100.0% | 23.7% |
| 4560474 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 82.0 | 5.37e-01 | 100.0% | 28.3% |
| 1140434 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 80.0 | 5.02e-01 | 100.0% | 21.6% |
| 3090020 | 3239.1.1.0 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 | 0.86 | 79.0 | 6.27e-01 | 100.0% | 52.6% |
| 1712635 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 79.0 | 5.10e-01 | 100.0% | 24.7% |
| 5017861 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 78.0 | 4.82e-01 | 100.0% | 22.1% |
| 4857416 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.84 | 77.0 | 5.01e-01 | 100.0% | 26.4% |
| 4996634 | 3239.1.1.0 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 | 0.80 | 65.0 | 4.09e-01 | 98.6% | 18.0% |
| 4889370 | 3239.1.1.0 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 | 0.77 | 67.0 | 5.14e-01 | 100.0% | 43.9% |
| 1412146 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.66 | 43.0 | 4.23e-01 | 78.1% | 61.3% |
| 4446833 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.66 | 59.0 | 4.61e-01 | 100.0% | 66.5% |
| 4124074 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.65 | 58.0 | 4.20e-01 | 98.6% | 68.5% |
| 3953223 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 49.0 | 4.47e-01 | 83.6% | 76.0% |
| 4601711 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.63 | 51.0 | 4.67e-01 | 87.7% | 67.4% |
| 4545637 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.63 | 55.0 | 3.31e-01 | 98.6% | 86.5% |
| 3970105 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 44.0 | 4.36e-01 | 75.3% | 70.7% |
| 2434071 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.63 | 54.0 | 3.45e-01 | 95.9% | 46.2% |
| 2396497 | 2002.1.1.104 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_2_C | 0.63 | 54.0 | 3.45e-01 | 95.9% | 46.2% |
| 4881988 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.62 | 43.0 | 4.28e-01 | 72.6% | 100.0% |
| 3489128 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 53.0 | 3.31e-01 | 94.5% | 43.5% |
| 3401279 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.61 | 55.0 | 4.98e-01 | 100.0% | 91.0% |
| 1892334 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.61 | 43.0 | 4.09e-01 | 78.1% | 62.1% |
| 189443 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.61 | 55.0 | 4.00e-01 | 100.0% | 68.6% |
| 3264992 | 7575.1.1.1 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 | 0.60 | 52.0 | 3.77e-01 | 100.0% | 64.1% |
| 3970639 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 50.0 | 4.45e-01 | 94.5% | 87.3% |
| 11227 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.60 | 47.0 | 4.37e-01 | 87.7% | 67.0% |
| 5074262 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.60 | 53.0 | 3.99e-01 | 100.0% | 78.3% |
| 2771818 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.59 | 48.0 | 3.71e-01 | 90.4% | 52.9% |
| 5057630 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.59 | 52.0 | 3.98e-01 | 100.0% | 65.9% |
| 3299595 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.57 | 34.0 | 2.69e-01 | 98.6% | 25.3% |
| 3722184 | 2003.1.2.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8, Pyr_redox_3 | 0.57 | 49.0 | 3.31e-01 | 100.0% | 76.7% |
| 3616040 | 2003.1.2.103 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase, NAD_binding_8 | 0.56 | 47.0 | 2.96e-01 | 98.6% | 96.2% |
| 4929335 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 47.0 | 3.04e-01 | 98.6% | 41.3% |
| 4948382 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.52 | 45.0 | 3.73e-01 | 97.3% | 96.9% |
| 4248523 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.51 | 44.0 | 3.71e-01 | 100.0% | 93.1% |
| 4960395 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.51 | 43.0 | 2.94e-01 | 98.6% | 63.1% |
| 4989646 | 3156.1.1.1 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › COX2 | 0.50 | 40.0 | 3.33e-01 | 87.7% | 54.1% |
| 5059976 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.50 | 44.0 | 3.78e-01 | 100.0% | 96.6% |
D2
high
residues 85-283
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01867.22 best | Cas_Cas1 | 59.6 | 4.20e-16 | 81.9% | 51.9% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.92 | 89.0 | 7.93e-01 | 100.0% | 97.7% |
| 7cr6D02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.90 | 84.0 | 8.05e-01 | 97.0% | 100.0% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.89 | 84.0 | 7.87e-01 | 97.0% | 100.0% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.89 | 83.0 | 7.76e-01 | 97.5% | 99.6% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.88 | 81.0 | 7.55e-01 | 95.5% | 100.0% |
| 2yzsA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.84 | 81.0 | 7.66e-01 | 100.0% | 96.5% |
| 3godB02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.79 | 73.0 | 7.22e-01 | 97.5% | 100.0% |
| 3nkeA00 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.79 | 69.0 | 7.20e-01 | 98.5% | 98.9% |
| 4w8kA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.78 | 72.0 | 7.29e-01 | 98.0% | 100.0% |
| 3ezuA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 29.0 | 3.07e-01 | 71.9% | 56.6% |
| 3ddlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 37.0 | 3.48e-01 | 71.9% | 95.6% |
| 1h0oA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.52 | 38.0 | 3.39e-01 | 74.4% | 76.7% |
| 3f7cA00 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.51 | 42.0 | 4.25e-01 | 98.5% | 86.4% |
| 1ej5A00 | 3.90.810.10 | Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain | 0.51 | 26.0 | 3.42e-01 | 75.4% | 87.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4405603 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.97 | 95.0 | 8.04e-01 | 100.0% | 69.2% |
| 3385541 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.96 | 94.0 | 8.04e-01 | 100.0% | 69.3% |
| 1723569 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.94 | 91.0 | 7.81e-01 | 100.0% | 69.5% |
| 4108899 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 89.0 | 7.25e-01 | 100.0% | 71.9% |
| 4542362 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 89.0 | 7.24e-01 | 100.0% | 74.0% |
| 1140434 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 89.0 | 7.13e-01 | 100.0% | 74.4% |
| 4041865 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 89.0 | 7.18e-01 | 100.0% | 72.9% |
| 4650684 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 89.0 | 7.26e-01 | 100.0% | 70.0% |
| 4971724 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.92 | 89.0 | 7.13e-01 | 100.0% | 74.2% |
| 4495021 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 88.0 | 7.03e-01 | 100.0% | 69.9% |
| 4947563 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 88.0 | 7.17e-01 | 100.0% | 74.6% |
| 4046811 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 88.0 | 7.35e-01 | 100.0% | 73.2% |
| 4346702 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 88.0 | 7.19e-01 | 100.0% | 71.8% |
| 5004081 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 85.0 | 7.05e-01 | 97.0% | 74.7% |
| 4486492 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.91 | 88.0 | 7.17e-01 | 100.0% | 73.0% |
| 4996324 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.90 | 87.0 | 7.11e-01 | 100.0% | 75.5% |
| 4438458 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.90 | 86.0 | 6.87e-01 | 98.5% | 70.3% |
| 4096065 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 86.0 | 7.04e-01 | 100.0% | 72.4% |
| 2816212 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 86.0 | 6.97e-01 | 100.0% | 71.3% |
| 5017861 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 86.0 | 6.68e-01 | 100.0% | 63.7% |
| 4933934 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 86.0 | 7.05e-01 | 100.0% | 73.5% |
| 2985803 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 85.0 | 6.86e-01 | 100.0% | 73.4% |
| 5009925 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 84.0 | 7.11e-01 | 100.0% | 71.1% |
| 4661121 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 84.0 | 7.15e-01 | 100.0% | 72.0% |
| 4392322 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 84.0 | 7.11e-01 | 100.0% | 72.0% |
| 4649506 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 83.0 | 6.89e-01 | 99.0% | 73.7% |
| 5077504 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 83.0 | 6.83e-01 | 100.0% | 73.2% |
| 4088587 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 83.0 | 6.99e-01 | 100.0% | 69.5% |
| 4928071 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 81.0 | 6.82e-01 | 98.5% | 75.8% |
| 147026 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.79 | 74.0 | 6.17e-01 | 98.0% | 66.3% |
| 4857416 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.77 | 72.0 | 6.17e-01 | 97.5% | 67.8% |
| 3884902 | 5001.1.1.10 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Ceramidase | 0.54 | 43.0 | 3.93e-01 | 83.9% | 90.4% |
| 3234775 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.53 | 38.0 | 3.34e-01 | 73.4% | 92.6% |