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SRR1747019_scaffold_113_prodigal-single.1__X__X__00030
Bact-VirSRR1747019_scaffold_113_prodigal-single.1__X__X__00030
Identity
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 68-175_465-515
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16592.11 best | Cas9_REC | 27.5 | 2.00e-06 | 62.3% | 8.1% |
| PF16593.12 | Cas9-BH | 39.3 | 5.70e-10 | 17.0% | 78.8% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4al0A00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.60 | 33.0 | 3.42e-01 | 84.9% | 56.2% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.59 | 28.0 | 3.35e-01 | 84.3% | 64.8% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.53 | 21.0 | 3.11e-01 | 76.7% | 88.3% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 25.0 | 3.28e-01 | 79.2% | 84.3% |
| 1b68A00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.51 | 33.0 | 3.57e-01 | 81.1% | 74.6% |
| 3di2A00 | 1.20.1250.50 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 27.0 | 3.07e-01 | 100.0% | 67.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4861007 | 3819.1.1.2 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe | 0.88 | 86.0 | 6.99e-01 | 100.0% | 96.5% |
| 2511942 | 3819.1.1.2 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe | 0.87 | 85.0 | 5.36e-01 | 100.0% | 57.5% |
| 5002309 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 36.0 | 3.48e-01 | 100.0% | 51.4% |
| 3304829 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.51 | 37.0 | 3.63e-01 | 100.0% | 69.0% |
| 4941988 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.51 | 35.0 | 3.65e-01 | 100.0% | 75.2% |
| 3857195 | 109.4.1.1578 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30504 | 0.51 | 36.0 | 3.24e-01 | 73.6% | 73.5% |
D2
high
residues 187-333
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.67 | 38.0 | 4.05e-01 | 100.0% | 62.3% |
| 2btdA00 | 1.25.40.340 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain | 0.60 | 53.0 | 4.73e-01 | 97.3% | 95.7% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.58 | 42.0 | 4.17e-01 | 100.0% | 71.2% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 33.0 | 4.21e-01 | 99.3% | 100.0% |
| 3vkgA18 | 1.10.8.720 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor | 0.52 | 43.0 | 4.11e-01 | 89.1% | 91.3% |
| 4y2fA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 42.0 | 4.34e-01 | 99.3% | 89.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3216092 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.60 | 38.0 | 3.91e-01 | 100.0% | 64.8% |
| 3814874 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 36.0 | 3.40e-01 | 72.8% | 86.1% |
D3
high
residues 570-740
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16592.11 best | Cas9_REC | 79.3 | 4.10e-22 | 100.0% | 32.1% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2511942 | 3819.1.1.2 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe | 0.85 | 82.0 | 5.31e-01 | 100.0% | 26.3% |
| 4922640 | 2484.1.1.238 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_REC | 0.85 | 47.0 | 5.09e-01 | 83.6% | 63.5% |
| 4922668 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.84 | 46.0 | 5.02e-01 | 83.6% | 63.5% |
| 4869022 | 3819.1.1.1 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › Cas9_REC | 0.83 | 54.0 | 5.75e-01 | 78.4% | 73.4% |
| 1684073 | 3819.1.1.0 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe | 0.80 | 76.0 | 5.68e-01 | 100.0% | 47.4% |
| 4851841 | 3819.1.1.3 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › Cas9_a | 0.74 | 70.0 | 6.61e-01 | 100.0% | 93.5% |
| 3387670 | 3819.1.1.0 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe | 0.74 | 70.0 | 5.20e-01 | 100.0% | 44.9% |
| 2550471 | 3819.1.1.3 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › Cas9_a | 0.74 | 69.0 | 5.14e-01 | 100.0% | 47.3% |
| 3058754 | 3819.1.1.0 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe | 0.72 | 67.0 | 5.12e-01 | 100.0% | 48.5% |
| 3554793 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.70 | 31.0 | 4.61e-01 | 87.7% | 94.7% |
| 3468254 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.70 | 30.0 | 4.64e-01 | 87.1% | 100.0% |
| 3992442 | 592.7.1.1 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 | 0.70 | 33.0 | 4.59e-01 | 90.6% | 90.6% |
| 3266110 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.69 | 30.0 | 4.36e-01 | 86.5% | 88.7% |
| 3258043 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.58 | 31.0 | 3.76e-01 | 88.3% | 77.3% |
| 3550609 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.57 | 32.0 | 3.82e-01 | 90.1% | 80.0% |
| 3251428 | 3919.1.1.4 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD1_N | 0.54 | 31.0 | 3.75e-01 | 88.9% | 85.5% |
| 1883360 | 1101.1.1.1 ↗ | alpha bundles › Uncharacterized protein LPG2271 › Uncharacterized protein LPG2271 › Uncharacterized protein LPG2271 › DUF5638 | 0.54 | 30.0 | 3.73e-01 | 85.4% | 86.9% |
| 4397698 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.51 | 30.0 | 3.47e-01 | 94.2% | 79.2% |
D4
high
residues 854-999
Domain cluster:
rep: IMGVR_UViG_3300028298_000030-3300028298-Ga0268280_100070334__D8-134
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13395.13 best | HNH_4 | 71.2 | 7.40e-20 | 36.3% | 96.3% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hxiB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 29.0 | 2.99e-01 | 81.5% | 53.0% |
| 4g2aA02 | 1.20.58.1690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 27.0 | 3.35e-01 | 74.7% | 82.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2859872 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.84 | 75.0 | 6.79e-01 | 100.0% | 72.5% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.83 | 59.0 | 6.89e-01 | 74.0% | 98.2% |
| 3950953 | 377.1.1.78 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 | 0.81 | 40.0 | 5.76e-01 | 93.2% | 100.0% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.81 | 40.0 | 5.73e-01 | 90.4% | 100.0% |
| 2550470 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.79 | 60.0 | 5.71e-01 | 78.1% | 78.3% |
| 3952818 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.78 | 40.0 | 5.66e-01 | 88.4% | 100.0% |
| 1684075 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.71 | 66.0 | 6.30e-01 | 100.0% | 85.6% |
| 2663386 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.70 | 66.0 | 6.24e-01 | 100.0% | 86.4% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.65 | 46.0 | 5.00e-01 | 73.3% | 97.6% |
| 4966182 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.64 | 47.0 | 4.99e-01 | 74.7% | 100.0% |
| 3948700 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.64 | 46.0 | 4.93e-01 | 73.3% | 96.0% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.55 | 40.0 | 4.53e-01 | 80.1% | 99.1% |
| None | — | 0.53 | 46.0 | 4.67e-01 | 98.6% | 93.1% | |
| 4981807 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.51 | 45.0 | 4.48e-01 | 97.3% | 97.4% |
D5
medium
residues 1-67_1120-1160
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 28.0 | 2.76e-01 | 89.8% | 41.7% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.57 | 24.0 | 3.19e-01 | 82.4% | 73.1% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 24.0 | 3.05e-01 | 97.2% | 64.5% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 28.0 | 2.75e-01 | 88.9% | 45.0% |
| 2mhgA00 | 2.20.130.30 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 | 0.53 | 29.0 | 3.33e-01 | 93.5% | 74.7% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.50 | 28.0 | 2.61e-01 | 99.1% | 42.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4315437 | 2484.1.1.97 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC | 0.70 | 66.0 | 4.64e-01 | 99.1% | 100.0% |
| 4277444 | 2484.1.1.97 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC | 0.69 | 65.0 | 4.67e-01 | 100.0% | 98.6% |
| 3263006 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.55 | 31.0 | 2.76e-01 | 100.0% | 37.5% |
| 5046458 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.53 | 33.0 | 2.79e-01 | 100.0% | 37.1% |
| 4324615 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.52 | 30.0 | 2.72e-01 | 100.0% | 39.4% |
| 4975453 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.52 | 31.0 | 2.74e-01 | 100.0% | 37.9% |
| 5038572 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 32.0 | 2.89e-01 | 93.5% | 46.0% |
D6
medium
residues 360-464
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xcqA02 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.54 | 47.0 | 3.57e-01 | 99.0% | 87.5% |
| 2luyA01 | 3.30.60.210 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain | 0.53 | 22.0 | 2.78e-01 | 72.4% | 61.4% |
D7
medium
residues 741-790
Domain cluster:
representative
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3614778 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 39.0 | 2.95e-01 | 82.0% | 55.5% |
| 5044837 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 39.0 | 3.72e-01 | 80.0% | 86.7% |
| 5046198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 39.0 | 3.80e-01 | 80.0% | 94.5% |
| 3741610 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 35.0 | 2.43e-01 | 78.0% | 76.8% |
D8
medium
residues 1308-1326_1350-1370_1380-1436
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.59 | 49.0 | 4.49e-01 | 91.8% | 86.7% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.52 | 40.0 | 4.11e-01 | 88.7% | 85.4% |