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SRR1747021_scaffold_144_prodigal-single.1__X__X__00018
Bact-VirSRR1747021_scaffold_144_prodigal-single.1__X__X__00018
Identity
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-156
D2
high
residues 337-394
Domain cluster:
representative
CATH (51)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.83 | 60.0 | 6.71e-01 | 75.9% | 100.0% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.79 | 61.0 | 6.20e-01 | 82.8% | 91.2% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.77 | 56.0 | 5.67e-01 | 77.6% | 84.2% |
| 7r6yA01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.76 | 64.0 | 5.44e-01 | 91.4% | 89.1% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.76 | 64.0 | 5.38e-01 | 93.1% | 80.4% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.75 | 58.0 | 4.73e-01 | 82.8% | 61.2% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.75 | 61.0 | 5.15e-01 | 94.8% | 54.8% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.74 | 55.0 | 5.85e-01 | 79.3% | 100.0% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.74 | 59.0 | 5.34e-01 | 86.2% | 85.7% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.74 | 63.0 | 5.31e-01 | 93.1% | 77.7% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.74 | 63.0 | 5.43e-01 | 93.1% | 88.6% |
| 1nxzA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.74 | 65.0 | 6.05e-01 | 100.0% | 93.1% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.73 | 64.0 | 6.11e-01 | 100.0% | 94.1% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.73 | 60.0 | 5.14e-01 | 94.8% | 57.8% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 60.0 | 5.65e-01 | 94.8% | 74.6% |
| 1ix5A00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.71 | 55.0 | 4.05e-01 | 84.5% | 32.5% |
| 1z85A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.70 | 61.0 | 5.85e-01 | 100.0% | 94.0% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.69 | 59.0 | 5.07e-01 | 93.1% | 78.7% |
| 2egvA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.67 | 56.0 | 5.49e-01 | 100.0% | 95.5% |
| 3aiiA02 | 2.40.240.100 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.66 | 58.0 | 5.64e-01 | 100.0% | 98.4% |
| 3vseA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.66 | 54.0 | 5.24e-01 | 98.3% | 94.2% |
| 4f3lB02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 50.0 | 3.94e-01 | 86.2% | 79.8% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 47.0 | 3.61e-01 | 77.6% | 44.0% |
| 2j5uA02 | 2.40.10.340 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 | 0.64 | 58.0 | 5.10e-01 | 100.0% | 77.4% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.64 | 47.0 | 4.82e-01 | 89.7% | 82.1% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 45.0 | 3.55e-01 | 75.9% | 44.9% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 49.0 | 4.18e-01 | 89.7% | 98.0% |
| 1qtqA02 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.62 | 51.0 | 4.59e-01 | 100.0% | 96.7% |
| 6baoA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 46.0 | 3.63e-01 | 86.2% | 68.5% |
| 2l9pA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 43.0 | 3.19e-01 | 75.9% | 46.3% |
| 6g1yA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 42.0 | 3.49e-01 | 77.6% | 72.5% |
| 4p2bA04 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.59 | 48.0 | 4.40e-01 | 93.1% | 98.8% |
| 4zo2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 47.0 | 3.10e-01 | 96.6% | 24.9% |
| 2v4dE01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.58 | 45.0 | 4.05e-01 | 86.2% | 66.7% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 38.0 | 2.61e-01 | 84.5% | 17.7% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.56 | 43.0 | 4.16e-01 | 86.2% | 97.0% |
| 4v15A01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.55 | 46.0 | 3.54e-01 | 94.8% | 39.6% |
| 2jroA01 | 3.30.1910.10 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain | 0.55 | 39.0 | 3.81e-01 | 94.8% | 67.7% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.55 | 44.0 | 3.77e-01 | 87.9% | 68.4% |
| 2grgA01 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.55 | 41.0 | 3.74e-01 | 84.5% | 81.9% |
| 5x6vG00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 41.0 | 3.29e-01 | 84.5% | 65.9% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.55 | 44.0 | 3.48e-01 | 94.8% | 91.3% |
| 3lr5A00 | 3.30.450.300 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Sensor histidine kinase RisS, periplasmic domain | 0.53 | 39.0 | 3.23e-01 | 82.8% | 59.7% |
| 3d4gE03 | 2.60.40.3210 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain | 0.53 | 41.0 | 3.55e-01 | 89.7% | 69.3% |
| 3cueC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 39.0 | 3.06e-01 | 86.2% | 55.9% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.52 | 40.0 | 2.57e-01 | 89.7% | 55.8% |
| 7asgA02 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.52 | 40.0 | 3.21e-01 | 86.2% | 56.3% |
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.32e-01 | 89.7% | 57.9% |
| 2ea3A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 3.81e-01 | 98.3% | 67.9% |
| 1y4oA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 38.0 | 3.31e-01 | 87.9% | 76.0% |
| 1w63Q00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 37.0 | 2.96e-01 | 87.9% | 49.3% |
ECOD (87)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928950 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.87 | 65.0 | 7.01e-01 | 81.0% | 92.0% |
| 5033424 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.83 | 65.0 | 6.43e-01 | 82.8% | 86.7% |
| 5064515 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.82 | 64.0 | 6.38e-01 | 82.8% | 86.7% |
| 5047208 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.82 | 64.0 | 6.61e-01 | 82.8% | 87.3% |
| 4945988 | 284.4.1.3 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_C | 0.81 | 62.0 | 6.62e-01 | 81.0% | 94.0% |
| 4962327 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.80 | 62.0 | 6.34e-01 | 82.8% | 90.9% |
| 5036381 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.78 | 60.0 | 5.99e-01 | 82.8% | 88.3% |
| 4950268 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.78 | 60.0 | 5.97e-01 | 82.8% | 85.0% |
| 4959996 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.78 | 58.0 | 6.13e-01 | 79.3% | 94.0% |
| 4950522 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.78 | 60.0 | 6.21e-01 | 82.8% | 90.9% |
| 4948029 | 284.4.1.3 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_C | 0.78 | 60.0 | 6.41e-01 | 82.8% | 96.0% |
| 5039487 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.78 | 60.0 | 6.41e-01 | 82.8% | 96.0% |
| 4505321 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.78 | 61.0 | 6.22e-01 | 84.5% | 94.5% |
| 4932654 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.77 | 57.0 | 6.06e-01 | 79.3% | 94.0% |
| 5076062 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.77 | 60.0 | 6.16e-01 | 82.8% | 90.9% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 65.0 | 5.39e-01 | 96.6% | 54.7% |
| 4962679 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.77 | 59.0 | 6.11e-01 | 82.8% | 90.9% |
| 3199895 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 63.0 | 5.24e-01 | 94.8% | 53.7% |
| 4281020 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 64.0 | 5.35e-01 | 96.6% | 54.7% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 64.0 | 5.95e-01 | 96.6% | 74.3% |
| 4951499 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.76 | 59.0 | 5.46e-01 | 84.5% | 94.7% |
| 4933883 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.76 | 59.0 | 6.29e-01 | 82.8% | 96.0% |
| 4184958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 64.0 | 5.60e-01 | 96.6% | 62.4% |
| 4204303 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 63.0 | 5.38e-01 | 96.6% | 57.8% |
| 4087314 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 62.0 | 5.50e-01 | 94.8% | 63.7% |
| 5022659 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.75 | 57.0 | 5.24e-01 | 81.0% | 65.3% |
| 3601766 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.75 | 55.0 | 4.43e-01 | 79.3% | 76.5% |
| 5002569 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.75 | 58.0 | 6.18e-01 | 82.8% | 96.0% |
| 3829837 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.75 | 62.0 | 5.04e-01 | 91.4% | 81.8% |
| 5050004 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.75 | 64.0 | 5.47e-01 | 93.1% | 86.7% |
| 4163711 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.75 | 62.0 | 5.41e-01 | 94.8% | 61.2% |
| 3966502 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.75 | 63.0 | 5.19e-01 | 91.4% | 78.0% |
| 3481480 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.75 | 61.0 | 5.10e-01 | 89.7% | 84.0% |
| 5021658 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.75 | 57.0 | 6.03e-01 | 82.8% | 96.0% |
| 4512995 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.75 | 62.0 | 5.80e-01 | 96.6% | 74.3% |
| 4273414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 63.0 | 5.89e-01 | 96.6% | 75.7% |
| 2814716 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 62.0 | 5.17e-01 | 96.6% | 54.7% |
| 4854958 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 62.0 | 5.16e-01 | 96.6% | 54.2% |
| 3880866 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.74 | 63.0 | 5.16e-01 | 93.1% | 79.0% |
| 4111597 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 60.0 | 5.81e-01 | 94.8% | 78.5% |
| 4316004 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 61.0 | 5.36e-01 | 96.6% | 61.2% |
| 3310664 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.74 | 63.0 | 5.29e-01 | 93.1% | 80.0% |
| 3973553 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 62.0 | 5.83e-01 | 96.6% | 75.7% |
| 5037792 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.74 | 56.0 | 4.90e-01 | 81.0% | 81.2% |
| 4939535 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.74 | 59.0 | 5.19e-01 | 87.9% | 65.9% |
| 3386080 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.73 | 63.0 | 5.25e-01 | 94.8% | 81.0% |
| 3204011 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 61.0 | 5.19e-01 | 94.8% | 57.8% |
| 4407497 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 60.0 | 5.76e-01 | 93.1% | 78.5% |
| 4047241 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 62.0 | 5.19e-01 | 96.6% | 55.8% |
| 4932128 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.73 | 63.0 | 5.52e-01 | 94.8% | 82.4% |
| 5001027 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.73 | 62.0 | 5.33e-01 | 93.1% | 83.3% |
| 4984743 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.73 | 62.0 | 5.24e-01 | 93.1% | 80.0% |
| 4500949 | 1.1.5.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF26339 | 0.73 | 64.0 | 5.92e-01 | 100.0% | 94.7% |
| 4972564 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.72 | 62.0 | 5.24e-01 | 94.8% | 80.0% |
| 4468653 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.72 | 62.0 | 5.27e-01 | 94.8% | 81.1% |
| 4083044 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.72 | 62.0 | 5.69e-01 | 94.8% | 77.3% |
| 5015359 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.71 | 61.0 | 5.31e-01 | 93.1% | 75.3% |
| 3969735 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 60.0 | 5.66e-01 | 93.1% | 92.9% |
| 4038642 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 61.0 | 5.68e-01 | 96.6% | 77.1% |
| 3292420 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 63.0 | 5.42e-01 | 98.3% | 94.4% |
| 4989083 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.71 | 56.0 | 5.72e-01 | 86.2% | 90.9% |
| 5021656 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.70 | 54.0 | 5.70e-01 | 82.8% | 96.0% |
| 4631894 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.70 | 60.0 | 4.79e-01 | 94.8% | 52.2% |
| 5076995 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 61.0 | 5.43e-01 | 96.6% | 73.8% |
| 4995896 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 59.0 | 4.55e-01 | 94.8% | 69.2% |
| 5008884 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.68 | 58.0 | 5.08e-01 | 94.8% | 78.8% |
| 3735267 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 57.0 | 5.00e-01 | 93.1% | 80.0% |
| 4942725 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.67 | 56.0 | 4.82e-01 | 94.8% | 87.4% |
| 4883589 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 58.0 | 4.87e-01 | 98.3% | 93.8% |
| 4946739 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.60 | 51.0 | 4.98e-01 | 96.6% | 98.5% |
| 4581502 | 391.1.2.3 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC | 0.59 | 45.0 | 4.17e-01 | 84.5% | 94.7% |
| 3226500 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.58 | 45.0 | 3.00e-01 | 89.7% | 23.8% |
| 3201503 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 42.0 | 3.93e-01 | 84.5% | 100.0% |
| 5051010 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 43.0 | 3.62e-01 | 86.2% | 65.5% |
| 4947055 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 41.0 | 3.17e-01 | 82.8% | 62.9% |
| 3996654 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 41.0 | 3.40e-01 | 84.5% | 83.6% |
| 4946587 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 40.0 | 3.27e-01 | 86.2% | 58.5% |
| 3169378 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.54 | 41.0 | 3.22e-01 | 86.2% | 53.3% |
| 3303363 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 40.0 | 2.85e-01 | 86.2% | 37.1% |
| 3476370 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 39.0 | 3.11e-01 | 86.2% | 45.5% |
| 2817021 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.52 | 40.0 | 3.24e-01 | 87.9% | 67.2% |
| 4101338 | 5.1.4.60 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Tectonin | 0.52 | 45.0 | 3.06e-01 | 100.0% | 26.5% |
| 3598205 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.52 | 40.0 | 2.36e-01 | 86.2% | 13.7% |
| 5000843 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 3.27e-01 | 87.9% | 73.0% |
| 4989084 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.51 | 40.0 | 4.02e-01 | 96.6% | 86.7% |
| 2140466 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 38.0 | 3.31e-01 | 84.5% | 76.8% |
| 3711199 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.51 | 39.0 | 2.97e-01 | 86.2% | 44.7% |
D3
medium
residues 169-230
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tm0A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.64 | 55.0 | 4.24e-01 | 98.4% | 43.2% |
| 2e5aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.62 | 53.0 | 3.66e-01 | 100.0% | 62.7% |
| 3a7rA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 51.0 | 3.50e-01 | 98.4% | 59.3% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.59 | 49.0 | 4.80e-01 | 93.5% | 89.7% |
| 4lb0A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.59 | 49.0 | 3.74e-01 | 98.4% | 45.7% |
| 1rjaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 45.0 | 3.91e-01 | 100.0% | 54.0% |
| 1g8aA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 40.0 | 3.01e-01 | 75.8% | 89.2% |
| 6j7cA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 45.0 | 3.49e-01 | 95.2% | 44.2% |
| 6aikB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.56 | 49.0 | 3.16e-01 | 100.0% | 35.4% |
| 1feuA01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.56 | 46.0 | 4.17e-01 | 96.8% | 98.9% |
| 1a1aB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 45.0 | 3.91e-01 | 100.0% | 56.9% |
| 2esrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.60e-01 | 100.0% | 63.7% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 43.0 | 3.73e-01 | 100.0% | 52.8% |
| 2cr4A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 42.0 | 3.76e-01 | 93.5% | 55.6% |
| 5cehA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.55 | 47.0 | 3.06e-01 | 100.0% | 97.0% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.54 | 43.0 | 3.94e-01 | 90.3% | 98.8% |
| 2o0bA01 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.54 | 42.0 | 3.04e-01 | 91.9% | 45.9% |
| 1z85A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.51 | 40.0 | 4.02e-01 | 95.2% | 89.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4645759 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.64 | 56.0 | 4.00e-01 | 100.0% | 39.0% |
| 5016676 | 2007.1.1.15 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DUF2124 | 0.64 | 50.0 | 3.79e-01 | 100.0% | 34.2% |
| 4930189 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.61 | 49.0 | 5.02e-01 | 100.0% | 93.3% |
| 3333834 | 328.4.1.1 ↗ | a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY | 0.58 | 44.0 | 3.64e-01 | 87.1% | 70.4% |
| 3433209 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.57 | 47.0 | 4.07e-01 | 100.0% | 56.2% |
| 4315796 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 44.0 | 4.54e-01 | 100.0% | 90.0% |
| 3253514 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.57 | 47.0 | 4.18e-01 | 100.0% | 97.0% |
| 4568828 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.57 | 48.0 | 4.20e-01 | 100.0% | 99.0% |
| 4052507 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.56 | 45.0 | 4.06e-01 | 95.2% | 97.9% |
| 1879702 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.56 | 47.0 | 4.15e-01 | 96.8% | 95.7% |
| 4324086 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.56 | 45.0 | 3.98e-01 | 91.9% | 95.8% |
| 4288786 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.56 | 45.0 | 3.47e-01 | 96.8% | 44.8% |
| 4259249 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.56 | 46.0 | 4.10e-01 | 95.2% | 98.9% |
| 3284738 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.56 | 45.0 | 3.43e-01 | 95.2% | 44.8% |
| 3236190 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.55 | 46.0 | 3.30e-01 | 100.0% | 66.5% |
| 4267535 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.55 | 44.0 | 3.58e-01 | 100.0% | 44.6% |
| 4955625 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.55 | 44.0 | 3.37e-01 | 96.8% | 43.5% |
| 4285300 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.55 | 45.0 | 4.08e-01 | 100.0% | 100.0% |
| 4991854 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.54 | 44.0 | 4.01e-01 | 98.4% | 81.1% |
| 4231034 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.54 | 45.0 | 3.95e-01 | 98.4% | 94.0% |
| 3784098 | 2006.1.6.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Sec23_trunk | 0.54 | 46.0 | 3.01e-01 | 100.0% | 90.3% |
| 4681723 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.53 | 44.0 | 3.97e-01 | 100.0% | 97.9% |
| 4499400 | 211.1.1.52 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › PF29319 | 0.53 | 42.0 | 3.37e-01 | 90.3% | 95.6% |
| 3386607 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.53 | 45.0 | 3.76e-01 | 100.0% | 77.4% |
| 4493865 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.52 | 41.0 | 3.67e-01 | 95.2% | 96.0% |
| 5023370 | 2007.23.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › CbiG N-terminal domain-like › CbiG N-terminal domain-like › DUF2117 | 0.51 | 42.0 | 3.32e-01 | 100.0% | 92.7% |
| 3924309 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.50 | 39.0 | 3.47e-01 | 95.2% | 81.0% |