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SRR1747021_scaffold_144_prodigal-single.1__X__X__00024
Bact-VirSRR1747021_scaffold_144_prodigal-single.1__X__X__00024
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-65
Domain cluster:
rep: aot2015-SM02_SRR1761699_Peru_trim_clean_trim_clean_scaffold_10_curated_closed_complete_start-adj_prodigal-single.1__X__X__00327__D144-210
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kkuA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.66 | 57.0 | 4.30e-01 | 100.0% | 79.9% |
| 4ehcA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.65 | 56.0 | 3.57e-01 | 100.0% | 28.9% |
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.64 | 42.0 | 4.05e-01 | 87.0% | 58.7% |
| 3iuwA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.64 | 53.0 | 4.84e-01 | 100.0% | 94.9% |
| 1t62B00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.64 | 54.0 | 3.93e-01 | 100.0% | 76.1% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.63 | 54.0 | 4.78e-01 | 100.0% | 76.5% |
| 4p25D01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.61 | 51.0 | 3.60e-01 | 100.0% | 79.4% |
| 3girA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.61 | 42.0 | 3.60e-01 | 72.2% | 54.7% |
| 1dl5A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 52.0 | 3.48e-01 | 100.0% | 25.4% |
| 1yx2A02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.61 | 42.0 | 3.68e-01 | 74.1% | 67.4% |
| 4perB00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.60 | 50.0 | 4.08e-01 | 98.1% | 72.5% |
| 4hg2B01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 47.0 | 3.40e-01 | 90.7% | 88.7% |
| 2gbsA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.59 | 50.0 | 3.76e-01 | 100.0% | 60.0% |
| 3e0vB01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.59 | 45.0 | 3.30e-01 | 87.0% | 62.7% |
| 2b78A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.58 | 47.0 | 4.57e-01 | 100.0% | 93.9% |
| 2e28A03 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.58 | 46.0 | 3.54e-01 | 92.6% | 73.3% |
| 7chdE01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 46.0 | 3.37e-01 | 94.4% | 48.8% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.57 | 43.0 | 3.27e-01 | 100.0% | 34.9% |
| 2as0A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.56 | 45.0 | 4.31e-01 | 100.0% | 95.7% |
| 2f2hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 46.0 | 3.79e-01 | 98.1% | 55.0% |
| 1a49A01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.55 | 44.0 | 3.17e-01 | 92.6% | 59.1% |
| 2j9lA02 | 3.10.580.20 | Alpha Beta › Roll › CBS-domain › | 0.54 | 44.0 | 3.81e-01 | 98.1% | 95.7% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.53 | 42.0 | 2.73e-01 | 100.0% | 18.1% |
| 4qdgA02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.27e-01 | 94.4% | 84.4% |
| 4fdyA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.52 | 43.0 | 3.29e-01 | 96.3% | 82.8% |
| 3varA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 44.0 | 2.77e-01 | 100.0% | 32.6% |
| 2x0nA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 39.0 | 2.89e-01 | 92.6% | 38.8% |
| 5h8yD02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.51 | 43.0 | 2.99e-01 | 100.0% | 28.1% |
| 5gjnA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.51 | 39.0 | 3.00e-01 | 90.7% | 36.6% |
| 3jurA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.51 | 38.0 | 2.32e-01 | 98.1% | 10.4% |
| 4jbcA01 | 3.30.70.1690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.36e-01 | 92.6% | 77.3% |
| 3payB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.17e-01 | 94.4% | 83.3% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932847 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.69 | 59.0 | 4.58e-01 | 100.0% | 68.0% |
| 4953076 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.69 | 58.0 | 4.62e-01 | 100.0% | 91.7% |
| 5040467 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.68 | 55.0 | 3.56e-01 | 100.0% | 20.0% |
| 4105843 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.65 | 54.0 | 5.47e-01 | 100.0% | 98.2% |
| 4950776 | 1.1.9.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 | 0.64 | 54.0 | 4.12e-01 | 100.0% | 82.9% |
| 4957730 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.64 | 55.0 | 4.12e-01 | 100.0% | 66.4% |
| 3332553 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.63 | 55.0 | 4.31e-01 | 100.0% | 96.7% |
| 4937563 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.63 | 54.0 | 5.22e-01 | 98.1% | 86.7% |
| 4970789 | 1.1.9.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 | 0.63 | 56.0 | 4.15e-01 | 100.0% | 74.3% |
| 5016521 | 1.1.9.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 | 0.63 | 53.0 | 4.07e-01 | 100.0% | 73.3% |
| 3391363 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.63 | 55.0 | 3.84e-01 | 100.0% | 43.9% |
| 4995643 | 1.1.9.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH | 0.63 | 53.0 | 3.99e-01 | 100.0% | 68.3% |
| 5069398 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.63 | 50.0 | 3.89e-01 | 88.9% | 84.2% |
| 4107664 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 51.0 | 5.15e-01 | 100.0% | 96.4% |
| 2105336 | 1.1.9.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH | 0.61 | 53.0 | 3.92e-01 | 100.0% | 65.1% |
| 5073325 | 1.1.9.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 | 0.61 | 53.0 | 4.01e-01 | 100.0% | 75.7% |
| 4480061 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.61 | 51.0 | 4.99e-01 | 100.0% | 91.7% |
| 5079450 | 1.1.9.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH | 0.61 | 51.0 | 3.90e-01 | 100.0% | 70.0% |
| 5070577 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.61 | 48.0 | 4.08e-01 | 100.0% | 97.3% |
| 4133629 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.60 | 49.0 | 4.86e-01 | 100.0% | 96.7% |
| 4936770 | 7518.1.1.3 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DACZ_N | 0.60 | 50.0 | 3.94e-01 | 96.3% | 76.0% |
| 4406944 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.60 | 50.0 | 4.90e-01 | 100.0% | 88.3% |
| 4054728 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.60 | 50.0 | 4.93e-01 | 100.0% | 95.0% |
| 5016524 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.59 | 51.0 | 3.82e-01 | 100.0% | 65.5% |
| 4671607 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.59 | 48.0 | 4.74e-01 | 100.0% | 93.3% |
| 4557607 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.59 | 48.0 | 4.67e-01 | 100.0% | 86.2% |
| 4237622 | 1.1.9.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C | 0.59 | 48.0 | 4.69e-01 | 100.0% | 91.7% |
| 4318805 | 7581.1.1.12 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III_C | 0.58 | 46.0 | 3.50e-01 | 88.9% | 60.0% |
| 4328282 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 44.0 | 4.44e-01 | 100.0% | 90.9% |
| 4398407 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.57 | 46.0 | 4.43e-01 | 100.0% | 86.2% |
| 4234045 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.57 | 48.0 | 4.71e-01 | 100.0% | 91.7% |
| 4967659 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.57 | 40.0 | 2.92e-01 | 100.0% | 24.8% |
| 3700535 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.57 | 49.0 | 2.89e-01 | 100.0% | 24.7% |
| 5023730 | 1.1.9.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH | 0.57 | 45.0 | 3.52e-01 | 96.3% | 67.6% |
| 3284239 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.57 | 47.0 | 3.36e-01 | 98.1% | 28.9% |
| 4295048 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.57 | 46.0 | 4.60e-01 | 100.0% | 98.2% |
| 3937854 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 44.0 | 3.70e-01 | 100.0% | 48.0% |
| 4548793 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 46.0 | 4.27e-01 | 100.0% | 72.0% |
| 4330204 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 48.0 | 4.56e-01 | 100.0% | 92.3% |
| 4192164 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.55 | 44.0 | 4.39e-01 | 100.0% | 88.3% |
| 5077917 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.55 | 43.0 | 3.51e-01 | 94.4% | 81.7% |
| 4219020 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.55 | 45.0 | 4.42e-01 | 100.0% | 90.0% |
| 4985409 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.55 | 47.0 | 3.44e-01 | 100.0% | 47.1% |
| 4342072 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.55 | 43.0 | 4.35e-01 | 100.0% | 96.4% |
| 4261079 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.55 | 46.0 | 3.44e-01 | 100.0% | 46.7% |
| 4103393 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.54 | 45.0 | 4.44e-01 | 100.0% | 91.7% |
| 3263849 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.54 | 47.0 | 3.28e-01 | 100.0% | 50.3% |
| 2362 | 71.2.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind | 0.53 | 43.0 | 3.10e-01 | 98.1% | 32.8% |
| 3960342 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.52 | 44.0 | 3.19e-01 | 100.0% | 36.6% |
| 4943450 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.52 | 42.0 | 3.79e-01 | 100.0% | 91.8% |
| 5067350 | 7518.1.1.0 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like | 0.52 | 40.0 | 3.41e-01 | 94.4% | 83.8% |
| 3401089 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 42.0 | 3.29e-01 | 100.0% | 46.9% |
D2
high
residues 119-319
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02562.23 best | PhoH | 109.7 | 1.90e-31 | 97.5% | 91.7% |