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SRR1747021_scaffold_144_prodigal-single.1__X__X__00064
Bact-VirSRR1747021_scaffold_144_prodigal-single.1__X__X__00064
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-94
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g6eA00 | 2.60.20.30 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.69 | 40.0 | 4.02e-01 | 72.6% | 55.2% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 51.0 | 4.14e-01 | 95.2% | 46.9% |
| 3d0jA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 47.0 | 4.04e-01 | 94.0% | 50.0% |
| 1qwrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 37.0 | 3.69e-01 | 82.1% | 56.2% |
| 1yudA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 48.0 | 4.02e-01 | 95.2% | 49.7% |
| 4qkbA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.59 | 45.0 | 3.48e-01 | 82.1% | 40.7% |
| 1nqjB00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 42.0 | 3.83e-01 | 78.6% | 59.6% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 38.0 | 3.60e-01 | 70.2% | 98.1% |
| 5jtwA01 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.55 | 46.0 | 3.93e-01 | 91.7% | 82.7% |
| 2bv4A00 | 2.60.120.400 | Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin | 0.55 | 43.0 | 3.95e-01 | 86.9% | 85.0% |
| 1vwxH02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.54 | 41.0 | 3.87e-01 | 82.1% | 93.2% |
| 5jtwB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.21e-01 | 91.7% | 75.5% |
| 1fi2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 46.0 | 3.59e-01 | 100.0% | 53.2% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.53 | 37.0 | 3.60e-01 | 72.6% | 90.4% |
| 3wnoA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 40.0 | 3.54e-01 | 82.1% | 57.7% |
| 1w0nA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 38.0 | 3.41e-01 | 78.6% | 93.3% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.98e-01 | 86.9% | 88.5% |
| 2lw3A00 | 2.60.40.2880 | Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain | 0.50 | 38.0 | 3.78e-01 | 95.2% | 78.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3621402 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.70 | 45.0 | 5.11e-01 | 76.2% | 90.0% |
| 5036139 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.69 | 46.0 | 4.49e-01 | 83.3% | 63.3% |
| 3994897 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 44.0 | 4.93e-01 | 77.4% | 91.7% |
| 3710431 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.67 | 47.0 | 4.55e-01 | 86.9% | 65.3% |
| 3060788 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.65 | 42.0 | 4.70e-01 | 77.4% | 91.7% |
| 3969586 | 10.32.1.27 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › 7TMR-DISMED2 | 0.63 | 46.0 | 3.83e-01 | 78.6% | 51.3% |
| 4969555 | 10.12.1.100 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C | 0.62 | 51.0 | 4.28e-01 | 95.2% | 52.4% |
| 4048122 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.62 | 52.0 | 4.57e-01 | 94.0% | 74.6% |
| 3999000 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.59 | 44.0 | 4.42e-01 | 82.1% | 77.6% |
| 3233137 | 11.1.4.71 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_7th | 0.59 | 43.0 | 4.59e-01 | 82.1% | 91.4% |
| None | — | 0.58 | 46.0 | 2.95e-01 | 90.5% | 55.5% | |
| 3591572 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 43.0 | 3.86e-01 | 82.1% | 60.0% |
| 3503271 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.56 | 46.0 | 3.53e-01 | 91.7% | 43.0% |
| 4940079 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 43.0 | 4.55e-01 | 90.5% | 94.7% |
| 3626911 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.55 | 46.0 | 3.45e-01 | 91.7% | 43.8% |
| 3721047 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.55 | 48.0 | 3.62e-01 | 100.0% | 49.1% |
| 3971066 | 10.32.1.27 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › 7TMR-DISMED2 | 0.52 | 39.0 | 3.30e-01 | 82.1% | 51.3% |
| 4964411 | 274.1.1.67 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7289 | 0.52 | 37.0 | 2.89e-01 | 76.2% | 86.4% |
| 3727810 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 39.0 | 3.22e-01 | 82.1% | 45.0% |
| 4032756 | 7500.1.1.1 ↗ | a/b three-layered sandwiches › Glycerate kinase I (Pfam 02595) domain II › Glycerate kinase I (Pfam 02595) domain II › Glycerate kinase I (Pfam 02595) domain II › Gly_kinase | 0.51 | 43.0 | 3.33e-01 | 98.8% | 97.7% |
D2
high
residues 104-156
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qw6D00 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.63 | 52.0 | 4.58e-01 | 100.0% | 88.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3722685 | 109.4.1.129 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Leuk-A4-hydro_C | 0.73 | 63.0 | 4.60e-01 | 100.0% | 37.3% |
| 3737457 | 109.4.1.129 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Leuk-A4-hydro_C | 0.71 | 60.0 | 4.47e-01 | 100.0% | 38.0% |
| 4175298 | 109.4.1.129 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Leuk-A4-hydro_C | 0.70 | 59.0 | 4.32e-01 | 100.0% | 33.8% |
| 3861767 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.69 | 59.0 | 3.92e-01 | 100.0% | 25.3% |
| 3211049 | 611.3.1.4 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Pes-10 | 0.64 | 57.0 | 4.76e-01 | 100.0% | 61.1% |
| 5026135 | 2012.1.1.1 ↗ | a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › Memo | 0.64 | 47.0 | 3.02e-01 | 81.1% | 28.4% |
| 3191163 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.55 | 38.0 | 3.25e-01 | 77.4% | 56.2% |
| 5030275 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.54 | 44.0 | 2.87e-01 | 98.1% | 19.2% |
| 3504092 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.52 | 41.0 | 2.98e-01 | 86.8% | 63.9% |