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SRR1747021_scaffold_144_prodigal-single.1__X__X__00066
Bact-VirSRR1747021_scaffold_144_prodigal-single.1__X__X__00066
Identity
- Kingdom:
- phage
Quality
67.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-125
D2
medium
residues 126-186
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vbkA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.56 | 51.0 | 4.15e-01 | 100.0% | 69.4% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.56 | 40.0 | 3.64e-01 | 100.0% | 55.2% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 40.0 | 3.61e-01 | 96.7% | 52.7% |
| 4nmlA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 46.0 | 4.19e-01 | 100.0% | 78.9% |
| 1mk4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.48e-01 | 98.4% | 40.8% |
| 3kkjA02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.53 | 47.0 | 3.42e-01 | 100.0% | 38.9% |
| 4ponA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 40.0 | 3.01e-01 | 100.0% | 30.2% |
| 3quwA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.52 | 44.0 | 3.60e-01 | 100.0% | 83.2% |
| 3lmeC00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.51 | 41.0 | 3.45e-01 | 100.0% | 81.9% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.51 | 44.0 | 3.80e-01 | 100.0% | 68.0% |
| 1jp4A02 | 3.40.190.80 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.50 | 38.0 | 3.12e-01 | 86.9% | 59.7% |
| 6vt2A03 | 2.60.40.4140 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.46e-01 | 100.0% | 59.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929238 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.60 | 46.0 | 4.37e-01 | 96.7% | 69.3% |
| 4981701 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.58 | 40.0 | 3.94e-01 | 96.7% | 69.2% |
| 5055732 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 50.0 | 4.27e-01 | 100.0% | 64.0% |
| 3387365 | 872.8.1.0 ↗ | a+b two layers › Dodecin subunit-like › Probable RNA-binding protein N-terminal domain › Probable RNA-binding protein N-terminal domain | 0.55 | 45.0 | 4.48e-01 | 100.0% | 87.7% |
| 3855579 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 46.0 | 3.14e-01 | 96.7% | 27.4% |
| 3718412 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 48.0 | 3.04e-01 | 100.0% | 26.6% |
| 4058358 | 327.11.2.26 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st | 0.53 | 47.0 | 4.35e-01 | 100.0% | 78.8% |
| None | — | 0.53 | 43.0 | 3.12e-01 | 100.0% | 32.0% | |
| 4022846 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 48.0 | 3.25e-01 | 100.0% | 41.4% |
| 5001641 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.53 | 45.0 | 3.22e-01 | 100.0% | 33.0% |
| 3169277 | 320.2.1.0 ↗ | a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain | 0.53 | 45.0 | 4.21e-01 | 100.0% | 80.0% |
| 5031916 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.53 | 45.0 | 3.64e-01 | 100.0% | 58.4% |
| 3781110 | 301.7.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP | 0.52 | 44.0 | 3.53e-01 | 100.0% | 79.3% |
| 3662024 | 304.30.1.1 ↗ | a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A | 0.52 | 43.0 | 3.94e-01 | 100.0% | 74.4% |
| 3891680 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.52 | 40.0 | 3.12e-01 | 100.0% | 37.8% |
| 3683773 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.52 | 44.0 | 3.50e-01 | 96.7% | 47.7% |
| 3970173 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.52 | 42.0 | 3.56e-01 | 100.0% | 85.0% |
| 3603145 | 212.1.1.20 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Fae | 0.52 | 43.0 | 3.39e-01 | 98.4% | 65.5% |
| 3256537 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.52 | 44.0 | 2.99e-01 | 98.4% | 33.3% |
| 3499879 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 43.0 | 3.67e-01 | 96.7% | 61.9% |
| 4388950 | 101.1.2.100 ↗ | alpha arrays › HTH › HTH › winged helix domain › FeoC | 0.51 | 44.0 | 4.09e-01 | 98.4% | 86.3% |
| 3937069 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 37.0 | 2.32e-01 | 85.2% | 60.9% |
| 3266079 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.51 | 43.0 | 2.97e-01 | 100.0% | 28.3% |
| 4391653 | 2003.1.5.23 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 | 0.50 | 41.0 | 2.96e-01 | 100.0% | 47.9% |
| 4933369 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.50 | 42.0 | 3.41e-01 | 100.0% | 56.2% |
| 5038763 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 3.58e-01 | 100.0% | 61.1% |
| 5080346 | 328.2.1.1 ↗ | a+b two layers › IF3-like › C-terminal domain of ProRS › C-terminal domain of ProRS › ProRS-C_1 | 0.50 | 40.0 | 3.89e-01 | 100.0% | 78.4% |