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SRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00001

Bact-Vir

SRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00001

Identity

Kingdom:
phage

Quality

58.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
D2 high residues 795-880
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.64 54.0 3.36e-01 100.0% 15.9%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.64 53.0 3.96e-01 100.0% 35.9%
2ylkA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.63 56.0 4.71e-01 100.0% 62.1%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 55.0 5.19e-01 98.8% 84.3%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.61 43.0 3.98e-01 98.8% 55.7%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.61 52.0 4.45e-01 100.0% 58.9%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.60 46.0 4.27e-01 100.0% 65.5%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.58 51.0 4.78e-01 98.8% 95.4%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 4.56e-01 100.0% 93.4%
2pn5A10 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.58 48.0 4.07e-01 100.0% 54.8%
5zi7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.57 44.0 3.53e-01 100.0% 39.5%
4b60A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 48.0 4.11e-01 100.0% 64.7%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.56 43.0 3.23e-01 82.6% 85.1%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 49.0 4.20e-01 100.0% 61.0%
4mgqA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 46.0 3.91e-01 93.0% 70.5%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.56 48.0 4.46e-01 100.0% 98.2%
3kewA01 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 44.0 4.44e-01 96.5% 91.7%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.71e-01 96.5% 57.5%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 4.09e-01 100.0% 68.2%
4cuaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.81e-01 100.0% 97.8%
1pqxA00 3.30.1370.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Scaffold protein Nfu/NifU, N-terminal domain 0.54 46.0 4.54e-01 91.9% 90.1%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 4.04e-01 100.0% 85.8%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 45.0 4.23e-01 100.0% 74.8%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 3.67e-01 100.0% 51.0%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 46.0 4.13e-01 97.7% 75.4%
1vmfC00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.54 47.0 4.11e-01 100.0% 98.5%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 43.0 4.03e-01 100.0% 70.1%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 4.00e-01 98.8% 82.5%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 45.0 4.52e-01 98.8% 98.8%
1cx1A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.85e-01 100.0% 94.8%
3ibmB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.56e-01 100.0% 51.4%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 45.0 4.03e-01 100.0% 72.5%
1ayoA00 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.53 42.0 3.75e-01 100.0% 60.0%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.52 45.0 3.83e-01 100.0% 57.0%
7jsdA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 40.0 2.96e-01 84.9% 80.2%
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.52 40.0 3.17e-01 100.0% 36.1%
1sefA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.68e-01 100.0% 58.0%
1vphB00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.52 45.0 3.94e-01 100.0% 100.0%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 43.0 2.97e-01 91.9% 54.2%
2gy5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.14e-01 100.0% 84.8%
1hn0A04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 39.0 3.51e-01 97.7% 58.2%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 36.0 3.83e-01 73.3% 88.0%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.50 35.0 3.76e-01 84.9% 84.0%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 4.07e-01 100.0% 97.3%
4nehA05 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.50 44.0 3.52e-01 100.0% 56.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081149 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.75 57.0 6.18e-01 98.8% 100.0%
2491354 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.65 53.0 5.12e-01 100.0% 79.2%
4969607 11.1.5.49 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › bMG10 0.64 50.0 4.48e-01 98.8% 59.2%
4058379 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.62 38.0 4.36e-01 76.7% 83.1%
5059624 11.1.5.49 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › bMG10 0.62 49.0 4.29e-01 97.7% 56.9%
5044711 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 41.0 4.42e-01 80.2% 80.0%
3254387 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 50.0 4.96e-01 97.7% 85.6%
3496089 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 4.41e-01 98.8% 66.9%
3387879 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.60 37.0 4.22e-01 74.4% 83.1%
4314745 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.59 39.0 4.21e-01 77.9% 82.9%
3866223 11.1.5.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.58 47.0 4.05e-01 98.8% 54.3%
3273616 11.1.5.49 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › bMG10 0.58 47.0 4.11e-01 98.8% 57.0%
3863498 11.1.5.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.58 47.0 4.09e-01 97.7% 58.5%
3494959 11.1.5.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.58 51.0 4.12e-01 97.7% 50.9%
3600269 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 49.0 4.43e-01 100.0% 88.8%
3955635 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.57 41.0 3.69e-01 77.9% 61.6%
4989701 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.56 42.0 3.82e-01 80.2% 89.2%
153293 11.1.5.22 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Collagen_bind 0.56 49.0 4.11e-01 100.0% 57.1%
4988179 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 37.0 4.20e-01 80.2% 90.6%
3570835 12.5.1.2 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.55 48.0 3.83e-01 98.8% 50.6%
2126854 10.42.1.0 beta sandwiches › jelly-roll › ssRNA positive-strand viruses coat protein P (projecting) domain › ssRNA positive-strand viruses coat protein P (projecting) domain 0.55 41.0 3.72e-01 96.5% 58.0%
4006651 11.1.5.49 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › bMG10 0.55 46.0 3.86e-01 96.5% 57.6%
3503286 306.1.1.1 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.55 39.0 4.16e-01 88.4% 85.3%
167364 306.2.2.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › Hypothetical protein SAV1430 › Nfu_N 0.55 46.0 4.61e-01 91.9% 94.2%
3172185 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 4.33e-01 98.8% 88.2%
3583504 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.54 33.0 4.05e-01 77.9% 100.0%
5063797 304.165.1.0 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 0.54 37.0 3.33e-01 81.4% 50.8%
3709965 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.54 46.0 4.32e-01 100.0% 92.7%
3590259 306.1.1.1 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.54 40.0 3.95e-01 93.0% 72.6%
5044775 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 47.0 4.42e-01 100.0% 93.3%
4172901 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 47.0 4.33e-01 100.0% 92.2%
3229454 11.1.1.616 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_KY 0.53 45.0 3.90e-01 96.5% 67.1%
3958055 846.1.1.0 a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) 0.53 47.0 4.10e-01 100.0% 98.5%
3969011 10.12.1.27 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.53 42.0 3.79e-01 100.0% 63.5%
3405196 10.32.1.235 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MBF2 0.53 45.0 4.37e-01 97.7% 87.4%
5030445 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.52 40.0 3.47e-01 84.9% 91.7%
5042048 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 44.0 3.50e-01 100.0% 97.1%
4062230 11.1.5.49 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › bMG10 0.52 44.0 3.69e-01 97.7% 52.9%
1842935 11.1.5.57 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Zona_CL2 0.52 43.0 3.67e-01 100.0% 61.2%
3500183 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.78e-01 100.0% 91.3%
3876762 11.1.1.322 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITGAX-like_Ig_3 0.51 45.0 3.57e-01 100.0% 54.6%
5019196 12.1.1.120 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › PF27849 0.51 43.0 3.96e-01 95.3% 76.5%
4563164 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.51 44.0 4.05e-01 100.0% 73.9%
4469509 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.51 36.0 3.70e-01 79.1% 76.5%
3231619 12.3.1.26 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_63N 0.51 40.0 2.96e-01 88.4% 78.8%
3921212 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.50 42.0 4.09e-01 100.0% 84.0%
3860290 11.1.1.322 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITGAX-like_Ig_3 0.50 44.0 3.53e-01 100.0% 55.6%
5026113 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 42.0 4.08e-01 96.5% 100.0%
5069114 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.50 36.0 3.64e-01 89.5% 74.4%
4604481 12.3.1.8 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.50 41.0 3.03e-01 91.9% 74.6%
D3 medium residues 497-610
PDB