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SRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00039
Bact-VirSRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00039
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 358-463_482-497
Domain cluster:
rep: pre3_saliva_scaffold_3_prodigal-single.1__X__X__00227__D328-348_379-419_434-473
D2
medium
residues 508-611
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wknF00 | 6.20.50.120 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.60 | 27.0 | 3.86e-01 | 76.0% | 95.7% |
| 1ex0B02 | 3.90.260.10 | Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like | 0.54 | 37.0 | 2.72e-01 | 73.1% | 89.3% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 29.0 | 3.49e-01 | 89.4% | 86.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3991595 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.54 | 35.0 | 3.66e-01 | 98.1% | 71.6% |
| 3238244 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 31.0 | 3.37e-01 | 94.2% | 69.4% |
| 3257727 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.51 | 38.0 | 3.55e-01 | 78.8% | 78.5% |
| 4451287 | 3227.1.1.1 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC | 0.50 | 37.0 | 2.54e-01 | 77.9% | 41.8% |