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SRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00204

Bact-Vir

SRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00204

Identity

Kingdom:
phage

Quality

70.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-44_76-88_132-171
PDB
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wwvA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 47.0 5.31e-01 98.9% 93.8%
2p5zX04 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.69 50.0 5.64e-01 90.8% 100.0%
3zjyC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 50.0 5.38e-01 97.7% 90.5%
1d7qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 54.0 4.54e-01 97.7% 51.0%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 41.0 4.62e-01 81.6% 81.2%
3jqoA01 2.40.128.260 Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI 0.66 52.0 4.48e-01 85.1% 86.4%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 50.0 4.77e-01 100.0% 70.6%
4uhvA04 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.65 58.0 5.49e-01 97.7% 86.4%
2bhvB01 2.40.128.260 Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI 0.64 51.0 4.23e-01 87.4% 92.5%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 40.0 4.35e-01 80.5% 77.5%
1wthA01 2.40.50.260 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding protein domain 0.64 57.0 5.11e-01 100.0% 79.7%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.64 50.0 5.14e-01 98.9% 90.2%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 48.0 4.70e-01 98.9% 73.7%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.62 49.0 5.16e-01 96.6% 98.7%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 50.0 5.04e-01 97.7% 89.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 42.0 4.64e-01 86.2% 94.0%
3psiA06 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 50.0 4.78e-01 96.6% 78.0%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.61 48.0 4.94e-01 97.7% 89.3%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 50.0 5.07e-01 96.6% 100.0%
1p16B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 51.0 4.45e-01 100.0% 66.9%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 4.41e-01 92.0% 88.6%
2khiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 4.44e-01 100.0% 82.1%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 48.0 4.78e-01 95.4% 96.7%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 49.0 4.24e-01 97.7% 63.5%
1b7yB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 50.0 4.53e-01 97.7% 83.6%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 4.40e-01 98.9% 78.4%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 47.0 4.67e-01 96.6% 100.0%
3cqzH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 4.23e-01 96.6% 100.0%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 4.23e-01 100.0% 80.0%
3tiiB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 43.0 3.53e-01 98.9% 66.5%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.69e-01 97.7% 81.1%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.51 36.0 2.81e-01 73.6% 75.5%
6gmhH01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 3.57e-01 93.1% 100.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970340 2.7.1.4 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › DUF6484 0.76 55.0 4.78e-01 94.3% 51.2%
4478927 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.71 53.0 5.08e-01 97.7% 69.0%
3186247 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.71 55.0 4.79e-01 97.7% 55.4%
4552597 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.70 52.0 5.34e-01 97.7% 82.1%
4103220 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.69 52.0 5.56e-01 97.7% 92.0%
4343591 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.69 54.0 5.08e-01 100.0% 68.6%
332 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.69 54.0 4.54e-01 97.7% 51.0%
4927618 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.68 54.0 5.23e-01 97.7% 76.8%
3165931 2.7.1.3 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_Mu_Gp45 0.68 55.0 5.56e-01 97.7% 88.2%
4654307 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.68 50.0 5.49e-01 92.0% 97.1%
4935688 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.68 54.0 5.20e-01 98.9% 75.0%
4980752 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.67 54.0 5.05e-01 98.9% 71.4%
4024623 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.66 52.0 5.42e-01 100.0% 92.5%
4413978 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.66 59.0 4.18e-01 97.7% 35.4%
3971883 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.66 59.0 3.85e-01 97.7% 25.1%
3970828 2.7.1.0 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.66 58.0 4.44e-01 96.6% 47.2%
1113926 517.2.1.1 beta barrels › CBF-like › TraF › TraF › TrbI 0.65 52.0 4.07e-01 87.4% 93.8%
2468517 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.65 58.0 4.56e-01 96.6% 47.8%
3943688 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.65 58.0 4.56e-01 97.7% 52.2%
3243378 2.1.1.347 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30115 0.65 47.0 4.50e-01 93.1% 66.3%
3967453 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.65 58.0 5.68e-01 97.7% 96.8%
None 0.65 58.0 4.13e-01 97.7% 36.8%
5058911 2.7.1.0 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.65 57.0 5.31e-01 96.6% 80.9%
3970551 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.65 58.0 4.55e-01 97.7% 51.7%
4526081 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.65 49.0 5.29e-01 96.6% 100.0%
None 0.65 58.0 5.63e-01 97.7% 96.8%
4957569 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.64 56.0 5.48e-01 96.6% 87.4%
5003246 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.64 57.0 4.72e-01 97.7% 56.7%
3578306 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 46.0 4.84e-01 100.0% 88.0%
3612838 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 54.0 5.38e-01 100.0% 91.1%
4995814 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.62 54.0 4.45e-01 96.6% 53.8%
3946740 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.62 52.0 5.16e-01 97.7% 87.8%
4338421 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.62 44.0 4.90e-01 92.0% 100.0%
3242941 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 46.0 5.10e-01 93.1% 98.6%
4205168 2.1.1.38 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB 0.62 44.0 4.84e-01 95.4% 100.0%
3988534 2.1.1.104 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CvfB_1st 0.61 45.0 4.81e-01 93.1% 90.7%
5042620 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.61 55.0 5.08e-01 100.0% 78.2%
1731165 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.61 51.0 5.10e-01 97.7% 88.8%
4173773 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 43.0 4.44e-01 87.4% 77.4%
4930470 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 43.0 4.37e-01 87.4% 76.5%
3797107 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 5.10e-01 100.0% 89.5%
5036389 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 46.0 4.29e-01 98.9% 67.3%
3879039 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.59 50.0 4.52e-01 96.6% 69.6%
3774440 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 4.24e-01 96.6% 92.0%
371 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.58 51.0 4.36e-01 98.9% 69.0%
3784943 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.58 52.0 3.39e-01 100.0% 32.7%
3227987 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 4.70e-01 96.6% 96.0%
5000588 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.84e-01 97.7% 93.7%
3685388 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.06e-01 94.3% 75.0%
3164941 129.1.1.99 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › DUF4131 0.57 49.0 4.76e-01 97.7% 93.0%
4078426 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 49.0 4.50e-01 98.9% 85.8%
3173045 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.14e-01 98.9% 87.1%
4152821 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 47.0 4.40e-01 98.9% 73.0%
3387410 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 49.0 4.51e-01 100.0% 77.4%
3788854 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 3.82e-01 98.9% 82.1%
4027740 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 4.63e-01 97.7% 93.0%
3399810 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.55 46.0 4.59e-01 95.4% 90.0%
3575961 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 48.0 4.59e-01 95.4% 84.0%
4477149 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 46.0 4.34e-01 98.9% 75.5%
4964458 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 47.0 4.50e-01 98.9% 85.7%
3914307 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 48.0 4.56e-01 98.9% 100.0%
3188039 2.1.1.27 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.54 46.0 3.90e-01 96.6% 99.3%
4945664 2.1.1.357 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA-synt_2 0.54 44.0 4.27e-01 98.9% 81.0%
4968172 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 46.0 3.49e-01 98.9% 55.9%
5068809 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 46.0 3.49e-01 100.0% 55.1%
3965166 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 4.49e-01 95.4% 100.0%
3403038 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 44.0 3.44e-01 98.9% 70.0%
3271738 2.1.1.137 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF6748 0.52 45.0 4.16e-01 98.9% 96.5%
3191619 236.1.1.1 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.50 39.0 3.12e-01 86.2% 53.2%