Back to structures

SRR1747022_scaffold_36_prodigal-single.1__X__X__00065

Bact-Vir

SRR1747022_scaffold_36_prodigal-single.1__X__X__00065

Identity

Kingdom:
phage

Quality

82.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-95
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 41.0 3.04e-01 83.2% 26.2%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 52.0 4.33e-01 94.7% 65.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 41.0 3.48e-01 92.6% 43.5%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 41.0 3.64e-01 88.4% 52.3%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 44.0 3.90e-01 82.1% 57.8%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.62e-01 81.1% 85.5%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 40.0 3.11e-01 81.1% 34.6%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.68e-01 80.0% 81.2%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.54 42.0 3.39e-01 82.1% 63.1%
4n2cA02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.53 36.0 2.97e-01 70.5% 57.2%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.71e-01 85.3% 80.1%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.41e-01 70.5% 73.6%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.42e-01 70.5% 70.4%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.36e-01 70.5% 78.3%
1grwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.37e-01 75.8% 72.6%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.46e-01 96.8% 66.3%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.50 37.0 2.73e-01 78.9% 30.5%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.10e-01 88.4% 69.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251426 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.67 49.0 5.48e-01 88.4% 97.3%
3578918 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.65 39.0 3.43e-01 86.3% 40.7%
3516379 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 53.0 5.02e-01 89.5% 79.1%
4970186 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.61 42.0 3.77e-01 70.5% 80.0%
3502137 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 3.92e-01 75.8% 73.8%
3189800 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 42.0 3.64e-01 80.0% 48.3%
4416793 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.58 48.0 3.18e-01 91.6% 39.0%
4029521 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 49.0 4.02e-01 93.7% 58.3%
4084508 243.1.1.92 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26366 0.57 44.0 3.70e-01 80.0% 60.0%
3732472 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 43.0 3.54e-01 80.0% 50.0%
3459363 243.3.1.74 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF1668 0.56 45.0 4.69e-01 85.3% 95.3%
3577548 331.12.1.0 a+b two layers › TBP-like › YugN-like › YugN-like 0.56 38.0 3.61e-01 100.0% 58.4%
4682338 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 41.0 2.68e-01 80.0% 22.3%
3220280 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.55 42.0 3.99e-01 80.0% 70.0%
4600261 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.55 38.0 3.48e-01 80.0% 54.4%
3623405 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 39.0 3.35e-01 75.8% 50.0%
3995954 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 39.0 3.61e-01 75.8% 64.2%
3454135 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 35.0 3.56e-01 87.4% 67.0%
3907221 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.54 39.0 3.02e-01 84.2% 34.8%
3894313 11.1.5.116 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF26282 0.53 38.0 3.58e-01 75.8% 80.8%
5070717 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.53 36.0 3.51e-01 70.5% 75.2%
3235610 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.48e-01 78.9% 65.0%
5068878 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 35.0 2.65e-01 70.5% 38.7%
5060216 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 35.0 3.43e-01 70.5% 74.3%
1282324 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 42.0 3.76e-01 94.7% 63.9%
4969268 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.39e-01 70.5% 75.2%
4970150 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.38e-01 70.5% 74.3%
3288114 295.1.1.14 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF5984 0.51 44.0 3.26e-01 96.8% 41.2%
D2 medium residues 96-180
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 44.0 3.05e-01 77.6% 35.9%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 46.0 3.06e-01 84.7% 31.8%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.59 36.0 4.23e-01 78.8% 89.8%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.64e-01 76.5% 49.9%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 36.0 3.62e-01 78.8% 63.1%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 41.0 3.41e-01 77.6% 47.7%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 42.0 3.57e-01 81.2% 48.6%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.52e-01 70.6% 55.0%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.52e-01 78.8% 50.5%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.73e-01 84.7% 91.7%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.53 36.0 3.54e-01 78.8% 64.8%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.25e-01 78.8% 53.9%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.59e-01 76.5% 74.7%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 3.03e-01 91.8% 75.3%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.82e-01 92.9% 49.4%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 2.84e-01 90.6% 93.5%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.69e-01 90.6% 40.8%
1m6kA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 40.0 2.97e-01 88.2% 66.0%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 3.05e-01 100.0% 72.1%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.92e-01 92.9% 63.7%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.50 40.0 2.86e-01 89.4% 91.4%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.50 37.0 3.58e-01 80.0% 100.0%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.50 37.0 3.69e-01 77.6% 95.4%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.50 31.0 3.57e-01 75.3% 88.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024732 295.1.1.40 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Microp_apicomplexa_10 0.68 49.0 5.08e-01 76.5% 82.5%
3440964 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 45.0 3.05e-01 75.3% 31.1%
5013876 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 40.0 2.83e-01 78.8% 22.5%
5081581 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 43.0 3.18e-01 76.5% 38.7%
4974362 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 38.0 2.68e-01 78.8% 22.2%
3661827 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.59 49.0 4.01e-01 90.6% 78.7%
3709343 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.59 39.0 3.34e-01 74.1% 41.7%
5083094 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 39.0 2.79e-01 78.8% 23.6%
3699156 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.58 43.0 2.76e-01 78.8% 44.7%
3706524 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.58 43.0 2.99e-01 78.8% 63.4%
3273247 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 42.0 3.58e-01 78.8% 47.3%
3421489 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 40.0 2.83e-01 72.9% 59.7%
3606839 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 40.0 3.45e-01 71.8% 46.9%
4955361 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 38.0 2.67e-01 78.8% 23.1%
5058112 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.56 41.0 3.53e-01 78.8% 47.3%
3972133 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 38.0 2.73e-01 78.8% 25.0%
3518045 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.55 47.0 3.00e-01 96.5% 65.3%
3167073 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 46.0 3.76e-01 92.9% 96.2%
3614080 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.54 44.0 3.63e-01 89.4% 78.1%
3609745 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 37.0 3.29e-01 70.6% 54.4%
3375447 274.1.1.46 a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C 0.54 39.0 3.61e-01 75.3% 60.0%
3432676 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.54 39.0 3.35e-01 77.6% 100.0%
3897847 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.54 42.0 3.44e-01 87.1% 92.9%
4990980 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 37.0 3.58e-01 70.6% 70.5%
4947855 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.82e-01 91.8% 73.0%
3706741 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.53 43.0 3.17e-01 90.6% 84.9%
4569355 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 42.0 2.67e-01 85.9% 40.2%
3914972 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 39.0 3.07e-01 78.8% 56.2%
3933484 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.53 41.0 3.39e-01 85.9% 80.6%
3260438 5.1.2.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.53 44.0 2.95e-01 97.6% 70.7%
5010078 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.81e-01 90.6% 45.3%
3937237 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.52 39.0 3.32e-01 85.9% 82.4%
5047928 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.52 38.0 3.39e-01 77.6% 81.7%
3232550 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 39.0 3.93e-01 91.8% 81.2%
3606505 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.51 45.0 2.97e-01 100.0% 96.1%
3936609 5.1.3.176 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N 0.51 38.0 2.42e-01 78.8% 23.1%
3794870 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.51 39.0 3.28e-01 85.9% 85.0%
3451025 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.51 38.0 3.69e-01 82.4% 100.0%
3474976 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.50 38.0 3.27e-01 78.8% 84.6%
3228525 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.50 40.0 3.72e-01 87.1% 92.7%