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SRR1747022_scaffold_36_prodigal-single.1__X__X__00069
Bact-VirSRR1747022_scaffold_36_prodigal-single.1__X__X__00069
Identity
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-139
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 34.0 | 3.53e-01 | 70.8% | 48.5% |
| 3en2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 32.0 | 3.57e-01 | 70.8% | 53.8% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 34.0 | 3.48e-01 | 77.0% | 48.6% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 33.0 | 3.36e-01 | 73.5% | 47.3% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 33.0 | 4.10e-01 | 85.0% | 79.7% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.64 | 41.0 | 3.69e-01 | 100.0% | 46.5% |
| 4pofA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 26.0 | 2.78e-01 | 73.5% | 41.3% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 30.0 | 3.23e-01 | 80.5% | 53.5% |
| 2vq9A00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.57 | 33.0 | 3.22e-01 | 85.8% | 50.4% |
| 4tm5A01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.53 | 38.0 | 3.61e-01 | 95.6% | 62.1% |
| 1dzaA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.51 | 30.0 | 3.04e-01 | 85.0% | 54.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940677 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.72 | 32.0 | 2.61e-01 | 70.8% | 23.6% |
| 3284948 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 36.0 | 4.07e-01 | 75.2% | 63.5% |
| 4068016 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.70 | 34.0 | 3.60e-01 | 72.6% | 50.5% |
| 4264144 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.68 | 34.0 | 3.57e-01 | 74.3% | 51.4% |
| 4327241 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.67 | 33.0 | 3.53e-01 | 72.6% | 52.0% |
| 4955607 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.63 | 42.0 | 3.42e-01 | 100.0% | 35.8% |
| 3534592 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 26.0 | 3.55e-01 | 71.7% | 83.6% |
| 4896480 | 4010.1.1.1 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 | 0.57 | 51.0 | 4.43e-01 | 100.0% | 64.2% |
| 222748 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.56 | 31.0 | 3.38e-01 | 79.6% | 64.4% |
| 5000297 | 4010.1.1.0 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase | 0.55 | 50.0 | 3.60e-01 | 100.0% | 70.6% |
| 4240255 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.53 | 39.0 | 3.93e-01 | 77.0% | 87.0% |
| 3604270 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.53 | 45.0 | 4.32e-01 | 92.0% | 80.0% |
| 4120121 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.52 | 39.0 | 3.95e-01 | 76.1% | 90.9% |
| 4119784 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.52 | 39.0 | 3.80e-01 | 77.0% | 83.1% |
| 3181915 | 11.1.1.926 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7136 | 0.52 | 44.0 | 3.52e-01 | 92.9% | 58.3% |
| 4629438 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.52 | 38.0 | 3.91e-01 | 76.1% | 90.9% |
| 3185413 | 11.1.1.926 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7136 | 0.52 | 46.0 | 4.32e-01 | 98.2% | 94.3% |
| 4029929 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 46.0 | 3.62e-01 | 100.0% | 46.7% |
| 4978573 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.51 | 45.0 | 4.22e-01 | 92.9% | 85.9% |
| 4236774 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.51 | 43.0 | 4.17e-01 | 89.4% | 90.4% |
| 3217156 | 243.1.1.46 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 | 0.50 | 47.0 | 4.38e-01 | 100.0% | 86.4% |
| 3654114 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.50 | 34.0 | 2.81e-01 | 81.4% | 37.1% |
| 3452174 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.50 | 43.0 | 3.80e-01 | 91.2% | 67.9% |
| 4985264 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.50 | 43.0 | 4.00e-01 | 89.4% | 83.7% |