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SRR1747022_scaffold_36_prodigal-single.1__X__X__00078
Bact-VirSRR1747022_scaffold_36_prodigal-single.1__X__X__00078
Identity
- Kingdom:
- phage
Quality
81.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g19A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 69.0 | 4.64e-01 | 94.0% | 83.0% |
| 1ne3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 42.0 | 4.23e-01 | 70.1% | 60.3% |
| 2r39A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 51.0 | 4.35e-01 | 80.6% | 80.7% |
| 3io5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 56.0 | 3.67e-01 | 97.0% | 62.4% |
| 1v29B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 43.0 | 3.82e-01 | 73.1% | 58.8% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 45.0 | 3.63e-01 | 77.6% | 76.3% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.62 | 46.0 | 3.78e-01 | 80.6% | 91.9% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.61 | 40.0 | 4.14e-01 | 92.5% | 71.4% |
| 3hpcX00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.61 | 50.0 | 3.84e-01 | 91.0% | 78.1% |
| 3k5rA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.61 | 43.0 | 3.56e-01 | 74.6% | 64.1% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.61 | 41.0 | 4.27e-01 | 92.5% | 79.7% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.60 | 48.0 | 3.84e-01 | 89.6% | 80.1% |
| 6hswA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 44.0 | 2.72e-01 | 80.6% | 24.9% |
| 8t5tA01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.59 | 42.0 | 3.13e-01 | 77.6% | 34.1% |
| 4q6lA00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.59 | 43.0 | 3.47e-01 | 95.5% | 39.3% |
| 3pg6B00 | 3.30.390.130 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.58 | 43.0 | 3.48e-01 | 79.1% | 74.6% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.58 | 49.0 | 3.88e-01 | 97.0% | 74.8% |
| 3ugvA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 42.0 | 3.46e-01 | 79.1% | 41.3% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 40.0 | 3.34e-01 | 82.1% | 38.0% |
| 2zadA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 42.0 | 3.56e-01 | 77.6% | 83.3% |
| 4nehA04 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.58 | 42.0 | 3.28e-01 | 77.6% | 70.8% |
| 3jvaA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 42.0 | 3.55e-01 | 77.6% | 87.7% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.57 | 48.0 | 3.94e-01 | 97.0% | 83.3% |
| 2iqiB00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.56 | 47.0 | 3.53e-01 | 94.0% | 76.6% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.56 | 41.0 | 3.80e-01 | 92.5% | 61.9% |
| 2qddA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 41.0 | 3.35e-01 | 79.1% | 79.2% |
| 5b3pA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.56 | 39.0 | 3.23e-01 | 76.1% | 44.0% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 3.68e-01 | 80.6% | 76.5% |
| 3toyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 40.0 | 3.27e-01 | 77.6% | 81.9% |
| 1tkkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 39.0 | 3.38e-01 | 79.1% | 84.3% |
| 2hhiA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.53 | 43.0 | 3.68e-01 | 95.5% | 84.7% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.53 | 43.0 | 3.57e-01 | 97.0% | 75.2% |
| 7kx7A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 46.0 | 3.26e-01 | 100.0% | 54.9% |
| 3r8qA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.48e-01 | 77.6% | 78.7% |
| 2i4kA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 43.0 | 3.56e-01 | 94.0% | 98.4% |
| 7usrA01 | 2.60.40.2860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 2.81e-01 | 71.6% | 63.8% |
| 4e72A01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.51 | 43.0 | 3.62e-01 | 100.0% | 89.5% |
| 2p3hA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 41.0 | 3.61e-01 | 88.1% | 60.2% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3643697 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.80 | 68.0 | 4.95e-01 | 91.0% | 71.2% |
| 3830575 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.79 | 69.0 | 4.37e-01 | 100.0% | 20.3% |
| None | — | 0.79 | 70.0 | 4.49e-01 | 100.0% | 22.5% | |
| None | — | 0.79 | 68.0 | 4.30e-01 | 98.5% | 20.3% | |
| None | — | 0.79 | 69.0 | 4.54e-01 | 100.0% | 24.2% | |
| 4485228 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 69.0 | 4.28e-01 | 100.0% | 18.0% |
| 4450485 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.79 | 69.0 | 5.05e-01 | 100.0% | 37.6% |
| None | — | 0.78 | 69.0 | 4.52e-01 | 100.0% | 24.6% | |
| 4452602 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.78 | 69.0 | 4.28e-01 | 100.0% | 18.6% |
| None | — | 0.78 | 71.0 | 4.55e-01 | 100.0% | 23.2% | |
| None | — | 0.78 | 68.0 | 4.45e-01 | 100.0% | 23.3% | |
| None | — | 0.78 | 69.0 | 4.55e-01 | 100.0% | 24.5% | |
| None | — | 0.78 | 68.0 | 4.46e-01 | 100.0% | 23.7% | |
| 4995730 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.74 | 65.0 | 4.27e-01 | 97.0% | 79.3% |
| 3854719 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.70 | 56.0 | 3.74e-01 | 100.0% | 22.3% |
| 3945420 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.67 | 58.0 | 3.89e-01 | 100.0% | 24.5% |
| 5050431 | 283.2.1.8 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 | 0.66 | 49.0 | 4.17e-01 | 77.6% | 49.5% |
| 3580096 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.66 | 49.0 | 3.95e-01 | 79.1% | 94.4% |
| 3725599 | 11.1.1.233 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase | 0.65 | 50.0 | 4.38e-01 | 82.1% | 83.0% |
| 3513396 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.64 | 51.0 | 3.76e-01 | 88.1% | 75.0% |
| 3357183 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.64 | 49.0 | 3.71e-01 | 83.6% | 77.5% |
| 3564807 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.63 | 52.0 | 3.99e-01 | 91.0% | 63.9% |
| 4947993 | 283.2.1.19 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › NMD3 | 0.62 | 45.0 | 3.81e-01 | 76.1% | 47.3% |
| 3551896 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.62 | 45.0 | 4.51e-01 | 77.6% | 80.0% |
| 3254982 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.62 | 45.0 | 4.47e-01 | 77.6% | 84.3% |
| 5023988 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.62 | 45.0 | 3.81e-01 | 77.6% | 69.1% |
| 3705888 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 44.0 | 3.69e-01 | 77.6% | 81.7% |
| 4072295 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.59 | 48.0 | 2.98e-01 | 89.6% | 32.7% |
| 3621025 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 43.0 | 4.38e-01 | 77.6% | 87.7% |
| 4932581 | 2.1.1.12 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e | 0.59 | 43.0 | 4.41e-01 | 77.6% | 86.2% |
| 3272267 | 5.1.4.166 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF4 | 0.59 | 43.0 | 2.66e-01 | 77.6% | 13.1% |
| 3681357 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.59 | 44.0 | 3.30e-01 | 80.6% | 37.1% |
| 3894481 | 277.1.1.5 ↗ | a+b two layers › PX domain › PX domain › PX domain › Vps5 | 0.59 | 44.0 | 2.84e-01 | 88.1% | 15.1% |
| 3057488 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.59 | 42.0 | 3.09e-01 | 77.6% | 32.3% |
| 4472716 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.59 | 42.0 | 3.47e-01 | 85.1% | 40.0% |
| 3993341 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 44.0 | 4.13e-01 | 82.1% | 71.8% |
| 4023575 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 44.0 | 3.98e-01 | 82.1% | 58.9% |
| 4029311 | 5.1.4.73 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N | 0.58 | 43.0 | 2.70e-01 | 79.1% | 90.7% |
| 3736585 | 243.5.1.2 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN3 | 0.58 | 43.0 | 3.47e-01 | 80.6% | 45.2% |
| 3386178 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.58 | 49.0 | 3.72e-01 | 97.0% | 78.7% |
| 4858377 | 9.13.1.5 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like | 0.57 | 48.0 | 4.35e-01 | 97.0% | 67.0% |
| 3669519 | 2.1.1.105 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB | 0.57 | 41.0 | 3.67e-01 | 76.1% | 92.6% |
| 3610968 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 41.0 | 3.66e-01 | 77.6% | 97.0% |
| 4177430 | 7520.1.1.1 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA | 0.57 | 49.0 | 3.86e-01 | 100.0% | 55.3% |
| 4444614 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 40.0 | 3.76e-01 | 80.6% | 62.5% |
| 4017435 | 243.5.1.2 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN3 | 0.56 | 41.0 | 3.31e-01 | 79.1% | 43.0% |
| 3289386 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 40.0 | 3.74e-01 | 77.6% | 83.0% |
| 3726388 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.56 | 41.0 | 3.37e-01 | 79.1% | 46.4% |
| 3972242 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.55 | 47.0 | 3.62e-01 | 100.0% | 60.0% |
| 3184113 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.55 | 41.0 | 3.60e-01 | 80.6% | 72.0% |
| 3794483 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 46.0 | 3.53e-01 | 94.0% | 55.5% |
| 3201176 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.54 | 40.0 | 3.23e-01 | 79.1% | 45.2% |
| 3251788 | 9.1.1.37 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 | 0.54 | 45.0 | 3.52e-01 | 97.0% | 51.5% |
| 3808110 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.54 | 42.0 | 3.31e-01 | 86.6% | 70.0% |
| 4012966 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 39.0 | 3.27e-01 | 79.1% | 50.4% |
| 3924550 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.53 | 45.0 | 3.50e-01 | 97.0% | 48.4% |
| 4993190 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 42.0 | 3.75e-01 | 92.5% | 83.8% |
| 5055184 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 38.0 | 3.59e-01 | 91.0% | 62.4% |
| 4012805 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.51 | 44.0 | 3.59e-01 | 98.5% | 88.5% |
| 3478270 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.51 | 44.0 | 2.65e-01 | 100.0% | 36.9% |
| 4969387 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.50 | 41.0 | 2.72e-01 | 100.0% | 82.0% |
| 3288634 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.50 | 37.0 | 3.35e-01 | 82.1% | 95.0% |
D2
medium
residues 68-135
Domain cluster:
rep: term2_saliva_scaffold_1_prodigal-single.1__X__X__00157__D317-377
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jrjA02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.74 | 58.0 | 6.14e-01 | 88.2% | 100.0% |
| 1xp8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.71 | 56.0 | 5.87e-01 | 89.7% | 100.0% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.69 | 58.0 | 5.71e-01 | 97.1% | 90.7% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 35.0 | 3.01e-01 | 80.9% | 34.7% |
| 2w9mA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.54 | 33.0 | 3.56e-01 | 77.9% | 76.4% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.11e-01 | 82.4% | 58.9% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.52 | 37.0 | 3.64e-01 | 73.5% | 79.2% |
| 3dupA02 | 3.30.750.160 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.52 | 38.0 | 3.35e-01 | 91.2% | 50.9% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.65e-01 | 85.3% | 94.4% |
| 1f32A01 | 3.30.1120.50 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 | 0.51 | 35.0 | 3.61e-01 | 75.0% | 80.6% |
| 2qikA02 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.51 | 42.0 | 3.28e-01 | 94.1% | 68.8% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 3.06e-01 | 98.5% | 82.9% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4504505 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.74 | 58.0 | 6.06e-01 | 88.2% | 98.3% |
| 4568160 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.73 | 60.0 | 6.17e-01 | 92.6% | 100.0% |
| 4100290 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.73 | 58.0 | 5.59e-01 | 91.2% | 76.2% |
| 4098746 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.73 | 59.0 | 5.66e-01 | 91.2% | 77.5% |
| 4650117 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.72 | 58.0 | 5.61e-01 | 91.2% | 82.5% |
| 4524142 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.72 | 58.0 | 5.47e-01 | 92.6% | 72.9% |
| 3454856 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.72 | 59.0 | 5.79e-01 | 95.6% | 84.0% |
| 4250277 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.72 | 61.0 | 6.10e-01 | 97.1% | 95.7% |
| 4339052 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.72 | 59.0 | 5.68e-01 | 92.6% | 78.8% |
| 4680941 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.72 | 61.0 | 5.85e-01 | 98.5% | 83.3% |
| 4452602 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 59.0 | 3.76e-01 | 94.1% | 18.6% |
| 4258207 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.71 | 52.0 | 5.63e-01 | 82.4% | 100.0% |
| 3962196 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.71 | 60.0 | 5.99e-01 | 98.5% | 92.9% |
| 4485228 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 60.0 | 3.84e-01 | 100.0% | 18.9% |
| 4508262 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.71 | 55.0 | 5.76e-01 | 89.7% | 100.0% |
| 4144386 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.71 | 59.0 | 5.88e-01 | 97.1% | 91.4% |
| 4163672 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.70 | 59.0 | 5.92e-01 | 97.1% | 95.7% |
| 4214233 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.69 | 56.0 | 5.34e-01 | 94.1% | 75.9% |
| 4345267 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.69 | 58.0 | 5.59e-01 | 97.1% | 83.7% |
| 3421663 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.67 | 53.0 | 5.30e-01 | 94.1% | 88.6% |
| 3350669 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.67 | 55.0 | 5.50e-01 | 95.6% | 92.9% |
| 3499600 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 36.0 | 4.41e-01 | 72.1% | 97.5% |
| None | — | 0.61 | 49.0 | 2.92e-01 | 89.7% | 16.1% | |
| 3362575 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.61 | 50.0 | 2.95e-01 | 91.2% | 16.1% |
| 4472417 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.60 | 41.0 | 3.02e-01 | 72.1% | 47.2% |
| 2721320 | 386.1.1.7 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-U11-48K | 0.59 | 28.0 | 3.35e-01 | 88.2% | 64.4% |
| 4961807 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.58 | 36.0 | 3.97e-01 | 95.6% | 76.4% |
| 4668668 | 101.1.2.170 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_51 | 0.56 | 41.0 | 2.79e-01 | 80.9% | 52.4% |
| 4285697 | 3439.1.1.0 ↗ | a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain | 0.55 | 40.0 | 4.25e-01 | 79.4% | 93.2% |
| 3765582 | 386.1.1.289 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30903 | 0.54 | 35.0 | 3.41e-01 | 79.4% | 56.2% |
| 4106775 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 40.0 | 2.49e-01 | 82.4% | 32.3% |
| 3725907 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 41.0 | 4.09e-01 | 92.6% | 84.1% |
| 3742452 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 40.0 | 2.62e-01 | 80.9% | 30.7% |
| 3265742 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.53 | 45.0 | 3.10e-01 | 98.5% | 59.6% |
| 3716683 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.51 | 44.0 | 3.59e-01 | 100.0% | 57.8% |
| 3711961 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.50 | 40.0 | 3.09e-01 | 91.2% | 72.4% |
| None | — | 0.50 | 36.0 | 3.42e-01 | 77.9% | 94.1% | |
| 5059124 | 231.1.1.2 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 | 0.50 | 41.0 | 2.74e-01 | 92.6% | 43.1% |
| 4300779 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.50 | 34.0 | 3.16e-01 | 72.1% | 57.8% |