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SRR1747022_scaffold_36_prodigal-single.1__X__X__00109
Bact-VirSRR1747022_scaffold_36_prodigal-single.1__X__X__00109
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-68
Domain cluster:
rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00145__D3-71
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7pjjA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 42.0 | 3.34e-01 | 71.6% | 53.8% |
| 2x41A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 41.0 | 3.37e-01 | 71.6% | 58.0% |
| 5tf0B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 3.44e-01 | 71.6% | 62.2% |
| 5z9sA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 40.0 | 3.31e-01 | 71.6% | 56.1% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 41.0 | 3.93e-01 | 76.1% | 78.5% |
| 2qg3A00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.57 | 42.0 | 3.03e-01 | 77.6% | 26.8% |
| 4maiA00 | 2.70.50.70 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.57 | 49.0 | 3.66e-01 | 100.0% | 58.3% |
| 1g4mA01 | 2.60.40.840 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 44.0 | 3.35e-01 | 86.6% | 59.6% |
| 3w4rA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 38.0 | 3.68e-01 | 70.1% | 100.0% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.57 | 40.0 | 3.83e-01 | 77.6% | 97.6% |
| 4i3gA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.24e-01 | 71.6% | 62.3% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.56 | 47.0 | 4.39e-01 | 92.5% | 79.3% |
| 2hdeA01 | 3.10.20.550 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit | 0.56 | 43.0 | 3.53e-01 | 83.6% | 51.2% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 44.0 | 3.15e-01 | 92.5% | 39.5% |
| 3dkxA01 | 3.40.1310.30 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.55 | 46.0 | 3.82e-01 | 100.0% | 88.8% |
| 2zf8A01 | 2.60.40.2540 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 38.0 | 3.03e-01 | 76.1% | 36.4% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 38.0 | 3.28e-01 | 77.6% | 52.1% |
| 1uenA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.29e-01 | 80.6% | 46.4% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 38.0 | 3.98e-01 | 80.6% | 86.9% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.52 | 43.0 | 3.97e-01 | 98.5% | 95.8% |
| 2opcA00 | 2.60.40.2510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 37.0 | 3.09e-01 | 74.6% | 61.7% |
| 2vr5B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.05e-01 | 82.1% | 40.3% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.41e-01 | 74.6% | 95.1% |
| 1bolA00 | 3.90.730.10 | Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like | 0.51 | 37.0 | 2.74e-01 | 80.6% | 77.9% |
| 5nfiB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.09e-01 | 82.1% | 54.1% |
| 2w82A01 | 3.10.20.480 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Antirestriction protein ArdA, domain 1 | 0.50 | 35.0 | 3.71e-01 | 74.6% | 84.7% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4531584 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.83 | 49.0 | 6.07e-01 | 74.6% | 100.0% |
| 3721982 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.70 | 48.0 | 4.29e-01 | 71.6% | 97.9% |
| 4027775 | 2494.1.1.1 ↗ | a/b three-layered sandwiches › DTD-like › DTD-like (Pfam 02580) › DTD-like (Pfam 02580) › Tyr_Deacylase | 0.67 | 47.0 | 3.56e-01 | 74.6% | 85.4% |
| 3236610 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 45.0 | 4.25e-01 | 76.1% | 61.0% |
| 4964937 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.62 | 46.0 | 4.55e-01 | 92.5% | 77.1% |
| 4973338 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.62 | 47.0 | 3.20e-01 | 92.5% | 20.4% |
| 4014216 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 41.0 | 2.59e-01 | 80.6% | 12.8% |
| 3690804 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 47.0 | 3.09e-01 | 88.1% | 48.5% |
| 2883090 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.61 | 42.0 | 3.49e-01 | 71.6% | 61.9% |
| 4588002 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.61 | 42.0 | 3.42e-01 | 71.6% | 58.3% |
| 3220762 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.61 | 42.0 | 3.42e-01 | 77.6% | 38.4% |
| 4963700 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.59 | 41.0 | 3.49e-01 | 71.6% | 65.7% |
| 4151477 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.59 | 41.0 | 3.28e-01 | 71.6% | 54.3% |
| 4981060 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 45.0 | 3.84e-01 | 80.6% | 52.4% |
| 4135250 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 42.0 | 2.68e-01 | 77.6% | 17.4% |
| 4547125 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.58 | 41.0 | 4.50e-01 | 100.0% | 100.0% |
| 4991832 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.58 | 43.0 | 3.10e-01 | 80.6% | 26.3% |
| 3219365 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 41.0 | 3.55e-01 | 74.6% | 51.4% |
| 4955086 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.58 | 40.0 | 2.99e-01 | 77.6% | 27.0% |
| 3761549 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.57 | 41.0 | 3.27e-01 | 76.1% | 84.4% |
| 2494331 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.57 | 39.0 | 2.98e-01 | 70.1% | 46.0% |
| 3401548 | 221.1.1.69 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM | 0.57 | 44.0 | 3.95e-01 | 86.6% | 63.0% |
| 3265857 | 299.1.1.0 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain | 0.56 | 47.0 | 4.13e-01 | 100.0% | 80.0% |
| 4059719 | 304.9.1.61 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Thc1_RRM | 0.56 | 43.0 | 4.18e-01 | 83.6% | 97.3% |
| 2714493 | 304.55.1.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 | 0.55 | 49.0 | 4.08e-01 | 100.0% | 85.3% |
| 4960680 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.55 | 40.0 | 2.91e-01 | 76.1% | 52.4% |
| 3206193 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 39.0 | 2.82e-01 | 74.6% | 59.8% |
| 3895011 | 11.1.1.852 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 | 0.54 | 40.0 | 3.27e-01 | 82.1% | 62.1% |
| 4942818 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.53 | 38.0 | 3.15e-01 | 79.1% | 45.7% |
| 5050960 | 206.1.3.16 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin | 0.53 | 44.0 | 3.16e-01 | 94.0% | 36.7% |
| 3572711 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.53 | 34.0 | 2.77e-01 | 82.1% | 32.6% |
| 3192099 | 12.1.1.26 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_79C | 0.53 | 35.0 | 2.83e-01 | 70.1% | 46.6% |
| 4027198 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 43.0 | 3.86e-01 | 95.5% | 87.0% |
| 3940191 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 3.31e-01 | 82.1% | 46.4% |
| 3774505 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.52 | 37.0 | 2.59e-01 | 74.6% | 26.0% |
| 175113 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.52 | 40.0 | 3.22e-01 | 86.6% | 76.0% |
| 1678098 | 1.1.7.56 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Arabinose_Iso_C | 0.52 | 43.0 | 3.36e-01 | 100.0% | 50.3% |
| 4524448 | 3156.1.1.18 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › CLPTM1 | 0.52 | 40.0 | 3.01e-01 | 86.6% | 36.3% |
| 3728553 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 35.0 | 3.21e-01 | 73.1% | 51.6% |
| 3392540 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.51 | 37.0 | 2.74e-01 | 79.1% | 30.5% |
| 4948574 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.50 | 37.0 | 2.39e-01 | 83.6% | 70.5% |
D2
high
residues 71-176