←Back to structures

SRR1747022_scaffold_36_prodigal-single.1__X__X__00129

Bact-Vir

SRR1747022_scaffold_36_prodigal-single.1__X__X__00129

Identity

Kingdom:
phage

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-75
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.84 67.0 5.08e-01 85.1% 42.1%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 67.0 5.92e-01 100.0% 86.0%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 53.0 3.95e-01 76.1% 33.3%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.72 62.0 6.17e-01 98.5% 91.5%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.72 36.0 3.59e-01 73.1% 45.6%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 51.0 4.48e-01 86.6% 53.3%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.67 50.0 4.68e-01 85.1% 63.9%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 50.0 4.06e-01 83.6% 42.7%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 46.0 3.65e-01 80.6% 72.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3630257 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.89 82.0 5.83e-01 100.0% 94.4%
3626992 632.8.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.89 67.0 5.65e-01 86.6% 50.5%
3225902 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.85 78.0 5.76e-01 100.0% 44.4%
3505656 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.80 71.0 6.05e-01 100.0% 61.8%
3606890 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.80 61.0 4.03e-01 83.6% 22.5%
5047626 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 50.0 4.03e-01 70.1% 39.2%
3249439 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.71 62.0 4.78e-01 100.0% 44.4%
4617177 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 61.0 5.35e-01 98.5% 65.0%
3373542 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.69 47.0 4.94e-01 76.1% 80.0%
4237388 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.62 45.0 2.82e-01 77.6% 14.3%
D2 medium residues 93-212
PDB
Domain cluster: representative