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SRR1747022_scaffold_36_prodigal-single.1__X__X__00131
Bact-VirSRR1747022_scaffold_36_prodigal-single.1__X__X__00131
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-62
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 70.0 | 6.44e-01 | 100.0% | 95.5% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.77 | 64.0 | 5.58e-01 | 92.3% | 71.4% |
| 2y9fA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.75 | 63.0 | 4.54e-01 | 94.2% | 98.0% |
| 1sf9A02 | 2.30.30.340 | Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains | 0.75 | 63.0 | 6.30e-01 | 96.2% | 98.1% |
| 1n27A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 61.0 | 5.03e-01 | 96.2% | 61.5% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 54.0 | 5.59e-01 | 86.5% | 100.0% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.69 | 59.0 | 5.32e-01 | 98.1% | 100.0% |
| 3k2zA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.67 | 57.0 | 4.46e-01 | 100.0% | 47.1% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 55.0 | 5.22e-01 | 100.0% | 92.3% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 51.0 | 4.77e-01 | 86.5% | 90.9% |
| 1sb7A02 | 3.30.2340.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain | 0.62 | 45.0 | 3.40e-01 | 98.1% | 30.9% |
| 1ljoA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 51.0 | 4.62e-01 | 98.1% | 90.7% |
| 1smpI00 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 50.0 | 4.17e-01 | 96.2% | 95.0% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 46.0 | 3.98e-01 | 90.4% | 92.1% |
| 2fvgA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.59 | 51.0 | 4.57e-01 | 100.0% | 100.0% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 50.0 | 4.28e-01 | 100.0% | 76.7% |
| 4ac9C04 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.59 | 51.0 | 4.45e-01 | 100.0% | 90.0% |
| 1vziA01 | 2.20.28.100 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain | 0.59 | 39.0 | 4.29e-01 | 88.5% | 94.7% |
| 3gceA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.59 | 45.0 | 3.78e-01 | 92.3% | 91.3% |
| 2b1xA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.58 | 44.0 | 3.52e-01 | 90.4% | 85.7% |
| 3mcaA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 48.0 | 3.94e-01 | 96.2% | 74.5% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 49.0 | 4.50e-01 | 100.0% | 97.2% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.57 | 50.0 | 4.09e-01 | 100.0% | 92.8% |
| 1a3wB03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.56 | 48.0 | 4.01e-01 | 100.0% | 91.8% |
| 6su1D01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.56 | 48.0 | 4.00e-01 | 96.2% | 100.0% |
| 3t05A02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.56 | 49.0 | 4.00e-01 | 100.0% | 93.8% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.56 | 46.0 | 4.05e-01 | 94.2% | 62.3% |
| 1gp0A00 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.55 | 43.0 | 3.35e-01 | 90.4% | 83.5% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 49.0 | 4.13e-01 | 100.0% | 88.5% |
| 7r6yA01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.55 | 46.0 | 3.88e-01 | 96.2% | 100.0% |
| 4x8iA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.55 | 45.0 | 3.99e-01 | 100.0% | 100.0% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 38.0 | 3.56e-01 | 78.8% | 74.0% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.54 | 46.0 | 3.90e-01 | 100.0% | 92.6% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 45.0 | 3.77e-01 | 98.1% | 75.5% |
| 4twlA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.50 | 41.0 | 2.76e-01 | 96.2% | 64.0% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4963446 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 65.0 | 6.01e-01 | 92.3% | 93.8% |
| 3708283 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 64.0 | 5.50e-01 | 94.2% | 91.8% |
| 4429179 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.77 | 61.0 | 6.45e-01 | 88.5% | 100.0% |
| 5005813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 61.0 | 6.27e-01 | 96.2% | 92.0% |
| 3945489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 62.0 | 6.29e-01 | 90.4% | 100.0% |
| 3382832 | 4.1.1.302 ↗ | beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O | 0.75 | 61.0 | 4.19e-01 | 98.1% | 26.1% |
| 3782292 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.75 | 60.0 | 5.19e-01 | 88.5% | 90.0% |
| 4937423 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 64.0 | 5.41e-01 | 96.2% | 81.2% |
| 3264806 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 62.0 | 6.31e-01 | 92.3% | 100.0% |
| 4305196 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.74 | 63.0 | 6.42e-01 | 100.0% | 98.0% |
| 4280256 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.73 | 61.0 | 6.18e-01 | 98.1% | 96.0% |
| 4010317 | 4.1.1.395 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27398 | 0.73 | 64.0 | 5.95e-01 | 100.0% | 78.5% |
| 4965721 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 62.0 | 4.83e-01 | 98.1% | 77.4% |
| 3581696 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 57.0 | 5.81e-01 | 86.5% | 100.0% |
| 4550511 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.71 | 55.0 | 5.83e-01 | 90.4% | 100.0% |
| 4151014 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.71 | 61.0 | 5.87e-01 | 100.0% | 96.7% |
| 4665407 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.71 | 58.0 | 5.96e-01 | 98.1% | 96.0% |
| 3223271 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 59.0 | 5.13e-01 | 100.0% | 60.0% |
| 4534931 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.70 | 57.0 | 5.11e-01 | 92.3% | 65.3% |
| 4640515 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.69 | 57.0 | 5.86e-01 | 100.0% | 96.0% |
| 3451171 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 60.0 | 5.62e-01 | 100.0% | 96.9% |
| 3839849 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.69 | 60.0 | 5.62e-01 | 100.0% | 83.1% |
| 3989139 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.68 | 60.0 | 5.58e-01 | 100.0% | 81.5% |
| 4516378 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.68 | 59.0 | 5.37e-01 | 98.1% | 72.9% |
| 5036621 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 49.0 | 4.92e-01 | 92.3% | 94.5% |
| 5051148 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 42.0 | 4.05e-01 | 71.2% | 76.7% |
| 5051090 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.61 | 53.0 | 4.67e-01 | 100.0% | 90.0% |
| 2448699 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 52.0 | 4.81e-01 | 100.0% | 95.6% |
| 3958009 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.60 | 47.0 | 3.53e-01 | 92.3% | 76.0% |
| 3513769 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.60 | 52.0 | 4.68e-01 | 100.0% | 93.3% |
| None | — | 0.59 | 50.0 | 3.05e-01 | 96.2% | 17.1% | |
| 4235076 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.59 | 51.0 | 4.50e-01 | 100.0% | 88.7% |
| 3204011 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.58 | 50.0 | 4.26e-01 | 100.0% | 78.9% |
| 3634374 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.58 | 46.0 | 4.74e-01 | 90.4% | 92.0% |
| 3504860 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 47.0 | 4.35e-01 | 94.2% | 100.0% |
| 5057245 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.57 | 50.0 | 4.20e-01 | 100.0% | 91.1% |
| 4397965 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 42.0 | 3.14e-01 | 94.2% | 29.3% |
| 4407497 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 48.0 | 4.50e-01 | 96.2% | 78.5% |
| 4972564 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.57 | 50.0 | 4.10e-01 | 100.0% | 91.6% |
| 3177101 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.57 | 50.0 | 4.03e-01 | 100.0% | 93.0% |
| 5079674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.57 | 49.0 | 4.43e-01 | 100.0% | 93.3% |
| 4880414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 48.0 | 4.45e-01 | 100.0% | 95.7% |
| 3596767 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.56 | 49.0 | 4.00e-01 | 100.0% | 92.0% |
| 4880433 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 47.0 | 4.29e-01 | 96.2% | 71.4% |
| 3782195 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 47.0 | 4.09e-01 | 100.0% | 92.9% |
| 1515984 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.55 | 48.0 | 3.92e-01 | 100.0% | 93.0% |
| 4379635 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.55 | 48.0 | 3.97e-01 | 100.0% | 93.7% |
| 4949095 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.55 | 47.0 | 2.87e-01 | 100.0% | 16.4% |
| 3987212 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.55 | 48.0 | 3.83e-01 | 100.0% | 92.4% |
| 3739976 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.55 | 46.0 | 4.05e-01 | 100.0% | 92.9% |
| 3177070 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.54 | 46.0 | 4.06e-01 | 100.0% | 98.8% |
| 4251719 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.54 | 46.0 | 3.87e-01 | 100.0% | 93.7% |
| 3172227 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.53 | 45.0 | 3.80e-01 | 100.0% | 94.7% |
| 1345445 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.53 | 40.0 | 3.49e-01 | 94.2% | 51.1% |
| 4032563 | 10.29.1.2 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins › Siphovirus-type_tail_C | 0.53 | 43.0 | 3.35e-01 | 100.0% | 86.7% |
| 5015359 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.52 | 45.0 | 3.89e-01 | 100.0% | 90.6% |
| 3285392 | 2.4.1.6 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal | 0.52 | 35.0 | 2.85e-01 | 73.1% | 45.4% |
| 3230674 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 37.0 | 3.83e-01 | 84.6% | 97.8% |
| 3969204 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 40.0 | 3.74e-01 | 100.0% | 97.3% |