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SRR1747022_scaffold_36_prodigal-single.1__X__X__00215

Bact-Vir

SRR1747022_scaffold_36_prodigal-single.1__X__X__00215

Identity

Kingdom:
phage

Quality

93.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-109
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.78 46.0 4.75e-01 74.1% 62.4%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.77 54.0 5.13e-01 72.2% 68.0%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.76 51.0 5.67e-01 88.9% 86.0%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 51.0 5.97e-01 75.9% 100.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.73 52.0 5.25e-01 73.1% 99.1%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 47.0 5.37e-01 75.0% 89.7%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 52.0 5.21e-01 79.6% 73.1%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.71 51.0 5.29e-01 74.1% 92.9%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 47.0 5.42e-01 70.4% 93.5%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 46.0 5.35e-01 72.2% 93.5%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.71 50.0 5.19e-01 74.1% 99.0%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 53.0 5.07e-01 81.5% 68.9%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.70 52.0 4.26e-01 75.9% 80.9%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 42.0 4.93e-01 71.3% 86.5%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 48.0 4.84e-01 73.1% 69.7%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 48.0 5.47e-01 71.3% 98.8%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.69 49.0 4.85e-01 73.1% 95.6%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.69 54.0 4.66e-01 84.3% 65.5%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.69 47.0 5.10e-01 71.3% 85.2%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.69 51.0 4.58e-01 83.3% 56.4%
8ipqB01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.68 56.0 4.12e-01 88.9% 56.9%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.68 49.0 4.16e-01 75.9% 90.2%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 5.05e-01 81.5% 80.2%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 50.0 5.00e-01 84.3% 76.4%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.66 49.0 5.00e-01 77.8% 80.0%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 45.0 5.03e-01 70.4% 93.8%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 39.0 4.59e-01 75.9% 86.5%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 46.0 4.02e-01 72.2% 71.7%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 45.0 4.39e-01 71.3% 98.3%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 46.0 4.75e-01 74.1% 82.0%
7sgrA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.64 57.0 4.09e-01 98.1% 98.4%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.63 46.0 4.20e-01 75.0% 57.0%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.63 46.0 4.62e-01 76.9% 97.3%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 45.0 3.87e-01 73.1% 51.8%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.55e-01 80.6% 75.5%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 47.0 3.62e-01 78.7% 75.5%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 49.0 4.89e-01 84.3% 84.5%
1z23A00 1.20.120.830 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain 0.62 53.0 4.61e-01 93.5% 87.1%
7mqvC02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.61 39.0 3.98e-01 87.0% 65.7%
4cemA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 48.0 3.45e-01 86.1% 35.5%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 4.83e-01 93.5% 91.2%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.57 42.0 4.15e-01 76.9% 77.9%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.56 41.0 4.06e-01 92.6% 71.4%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.56 41.0 3.32e-01 75.9% 89.8%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 43.0 4.25e-01 84.3% 78.6%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.54 43.0 4.26e-01 86.1% 80.3%
2bg9C02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.51 42.0 3.69e-01 88.9% 92.5%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 41.0 4.14e-01 92.6% 88.8%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3628940 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.76 53.0 5.28e-01 71.3% 95.5%
3661101 3755.3.1.290 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PPI_helical 0.76 54.0 4.77e-01 74.1% 58.1%
4429833 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 51.0 5.14e-01 73.1% 91.8%
3273923 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 52.0 3.42e-01 74.1% 19.3%
3386700 304.58.1.0 a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.72 49.0 3.53e-01 70.4% 49.2%
3504347 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.71 50.0 5.35e-01 89.8% 84.2%
5039743 3755.3.1.637 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.70 50.0 4.30e-01 73.1% 52.1%
3702347 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 50.0 4.21e-01 74.1% 45.7%
3486312 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.69 51.0 4.93e-01 75.9% 83.2%
4042007 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.68 50.0 5.00e-01 75.9% 96.4%
3968781 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.68 49.0 4.40e-01 73.1% 62.8%
4649114 3559.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 0.68 46.0 4.77e-01 70.4% 74.0%
3598168 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.68 48.0 4.16e-01 72.2% 48.5%
3481541 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 48.0 5.04e-01 73.1% 81.0%
3876590 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.68 51.0 5.61e-01 97.2% 100.0%
3224526 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.68 46.0 4.11e-01 70.4% 50.0%
4453815 192.12.1.1 alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › Prok-TraM 0.68 46.0 4.86e-01 88.9% 78.9%
3471229 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.67 51.0 3.70e-01 81.5% 60.3%
3977409 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.67 56.0 5.18e-01 88.9% 88.9%
3717701 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.67 51.0 3.66e-01 81.5% 61.3%
3574626 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 48.0 4.41e-01 75.0% 78.6%
3240682 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 48.0 4.81e-01 75.9% 75.5%
3757568 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.65 48.0 4.91e-01 83.3% 79.0%
4028541 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.65 53.0 4.57e-01 87.0% 70.9%
3699468 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 46.0 3.80e-01 75.0% 87.5%
3740547 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.64 46.0 4.64e-01 75.0% 80.0%
3472594 109.3.1.251 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27745 0.64 56.0 4.76e-01 93.5% 87.1%
3940375 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 51.0 4.33e-01 86.1% 64.4%
3192393 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.64 48.0 2.99e-01 79.6% 78.2%
3278215 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.63 44.0 4.95e-01 73.1% 92.9%
3938318 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.62 54.0 5.19e-01 92.6% 98.3%
3935140 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.62 50.0 4.24e-01 87.0% 87.8%
3493417 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.62 53.0 4.64e-01 92.6% 63.7%
3235839 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.62 51.0 4.34e-01 88.9% 87.4%
3707236 3291.1.1.16 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod 0.61 50.0 4.28e-01 88.0% 62.3%
5000824 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.60 44.0 4.00e-01 75.9% 95.9%
3719904 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.60 52.0 3.57e-01 94.4% 36.2%
3389783 5030.1.1.0 extended segments › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL 0.60 47.0 4.79e-01 89.8% 85.7%
3766956 622.4.1.22 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › FAM186A-B_N 0.60 40.0 3.93e-01 73.1% 62.5%
185321 109.4.1.262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG4_C 0.59 51.0 3.91e-01 94.4% 70.0%
4937014 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.59 53.0 3.66e-01 100.0% 30.5%
3715005 604.8.1.0 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.59 46.0 4.07e-01 83.3% 86.9%
3831 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.59 47.0 4.83e-01 93.5% 91.2%
4034416 2004.1.1.481 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.58 52.0 3.55e-01 100.0% 32.3%
4349607 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.58 49.0 4.88e-01 94.4% 89.1%
3622487 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.57 47.0 4.71e-01 93.5% 87.3%