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SRR1747022_scaffold_43_prodigal-single.1__X__X__00034

Bact-Vir

SRR1747022_scaffold_43_prodigal-single.1__X__X__00034

Identity

Kingdom:
phage

Quality

95.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-55
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.86 61.0 4.82e-01 100.0% 38.8%
3bm3A00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.73 66.0 4.10e-01 100.0% 21.2%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.73 57.0 4.37e-01 100.0% 36.0%
6p66D01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.69 53.0 4.24e-01 100.0% 40.4%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.69 59.0 4.28e-01 100.0% 37.6%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 45.0 3.59e-01 100.0% 33.0%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.64 54.0 3.75e-01 100.0% 34.4%
2ogjA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.63 42.0 3.31e-01 74.5% 31.3%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 43.0 3.03e-01 74.5% 44.1%
4f0qA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 53.0 3.55e-01 100.0% 26.6%
3ijmA00 3.90.1570.20 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.59 48.0 3.57e-01 100.0% 33.6%
3syyA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.59 47.0 3.35e-01 100.0% 44.8%
1ze3D00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.58 39.0 3.04e-01 70.6% 31.0%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 44.0 3.35e-01 100.0% 33.6%
4yurA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 40.0 2.93e-01 78.4% 28.1%
3p8aA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 50.0 3.54e-01 100.0% 31.9%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 44.0 3.30e-01 90.2% 60.3%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 43.0 3.20e-01 100.0% 30.0%
4ynzB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 43.0 2.98e-01 90.2% 24.3%
2fckA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 44.0 3.10e-01 88.2% 43.9%
1q7sA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.56 42.0 3.25e-01 84.3% 35.0%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.50e-01 74.5% 52.9%
4jxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 42.0 2.96e-01 84.3% 38.6%
1ivyB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 45.0 2.70e-01 100.0% 51.6%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 3.68e-01 96.1% 80.6%
2qxlB05 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.54 37.0 2.92e-01 76.5% 54.3%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.81e-01 100.0% 61.8%
3owcB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 38.0 2.70e-01 84.3% 23.5%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 41.0 3.07e-01 94.1% 78.3%
5zyuA01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 42.0 2.98e-01 100.0% 32.8%
3zduA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 43.0 2.83e-01 90.2% 22.2%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 38.0 2.54e-01 88.2% 18.3%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.37e-01 96.1% 75.7%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 2.70e-01 90.2% 95.6%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 40.0 3.35e-01 88.2% 78.7%
5k9nB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 38.0 2.63e-01 84.3% 87.6%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029985 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.93 74.0 5.42e-01 100.0% 36.1%
4946865 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.86 67.0 5.15e-01 100.0% 39.1%
3506045 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.86 70.0 4.65e-01 100.0% 24.3%
4995692 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 75.0 5.44e-01 100.0% 42.3%
4944802 2008.1.1.15 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.81 74.0 4.55e-01 100.0% 57.7%
5040208 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.81 66.0 4.79e-01 100.0% 34.1%
5057728 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 64.0 4.75e-01 100.0% 36.0%
5030819 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 66.0 4.86e-01 100.0% 36.1%
4968758 2008.1.1.224 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_3 0.78 65.0 5.25e-01 100.0% 49.5%
5078940 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 72.0 4.96e-01 100.0% 37.4%
3969514 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 69.0 4.42e-01 100.0% 22.7%
4927469 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.75 67.0 4.94e-01 100.0% 40.0%
5038948 2008.1.1.224 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_3 0.74 62.0 4.69e-01 100.0% 40.3%
3338602 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.73 61.0 4.15e-01 100.0% 25.9%
3902183 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.72 50.0 2.95e-01 74.5% 10.1%
4126179 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.72 61.0 4.00e-01 94.1% 41.0%
3725549 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 60.0 3.94e-01 100.0% 27.0%
3813800 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.70 57.0 4.15e-01 100.0% 32.0%
4503642 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.69 62.0 4.92e-01 100.0% 51.0%
5027317 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 61.0 4.30e-01 100.0% 37.7%
4976802 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 58.0 4.29e-01 100.0% 36.3%
1030945 2008.1.1.34 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc 0.69 59.0 4.40e-01 100.0% 41.5%
3204747 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 59.0 3.74e-01 100.0% 33.0%
5012791 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 53.0 3.86e-01 100.0% 30.0%
4991881 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 56.0 4.50e-01 100.0% 44.5%
3486991 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 58.0 4.27e-01 100.0% 43.6%
3734989 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 57.0 3.70e-01 100.0% 26.8%
4547181 2008.1.1.134 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › XhoI 0.67 56.0 3.68e-01 100.0% 22.1%
3728231 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 55.0 3.52e-01 100.0% 24.9%
4990214 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 53.0 3.75e-01 100.0% 44.2%
3279780 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.65 55.0 3.74e-01 100.0% 35.0%
3287308 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.65 55.0 3.73e-01 100.0% 37.5%
3590207 2008.1.1.11 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA 0.65 56.0 3.98e-01 100.0% 32.5%
4928711 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 47.0 3.79e-01 96.1% 39.1%
3736943 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.63 52.0 3.37e-01 100.0% 31.6%
3252307 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.62 48.0 3.21e-01 100.0% 22.7%
2816426 213.1.1.72 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.62 44.0 2.91e-01 76.5% 32.4%
4927000 2008.1.1.217 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase 0.61 53.0 2.83e-01 100.0% 8.4%
3722420 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.59 48.0 3.54e-01 100.0% 53.8%
4948329 4271.1.1.0 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.59 48.0 3.24e-01 100.0% 34.7%
3280105 211.1.1.6 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 0.58 48.0 3.44e-01 100.0% 30.6%
4387318 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.57 47.0 3.16e-01 100.0% 40.9%
4950791 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.56 44.0 3.28e-01 100.0% 46.3%
3220044 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.80e-01 98.0% 76.8%
4990442 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.55 39.0 3.39e-01 82.4% 48.8%
3245598 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.54 45.0 3.13e-01 100.0% 50.5%
4291841 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.53 37.0 2.60e-01 72.5% 93.9%
4932802 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.53 40.0 2.67e-01 80.4% 22.1%
3585591 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.53 43.0 3.67e-01 94.1% 91.1%
5003069 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.53 42.0 3.09e-01 100.0% 44.6%
3555330 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.53 43.0 2.79e-01 100.0% 27.4%
3977248 5084.5.2.6 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › YhdP 0.53 40.0 2.54e-01 82.4% 18.6%
3576376 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.53 43.0 2.81e-01 96.1% 35.2%
3732052 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 38.0 3.12e-01 82.4% 53.6%
3845514 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.53 41.0 4.04e-01 96.1% 81.7%
4883556 304.17.1.1 ↗ a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG 0.52 46.0 3.69e-01 98.0% 71.0%
3881917 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 42.0 3.59e-01 100.0% 53.7%
3376990 7579.1.1.20 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT 0.51 42.0 2.51e-01 100.0% 14.2%
3927282 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 40.0 3.12e-01 100.0% 59.3%
4945570 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 42.0 3.05e-01 94.1% 34.0%
4504920 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.50 36.0 3.08e-01 82.4% 88.9%
1032929 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.50 38.0 3.14e-01 94.1% 46.7%
3737548 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.50 41.0 3.24e-01 92.2% 63.0%