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SRR1747022_scaffold_43_prodigal-single.1__X__X__00057

Bact-Vir

SRR1747022_scaffold_43_prodigal-single.1__X__X__00057

Identity

Kingdom:
phage

Quality

70.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-41
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.90 68.0 4.30e-01 81.6% 18.7%
1um8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 68.0 4.14e-01 94.7% 16.1%
4hkaA02 1.10.287.3810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 70.0 6.45e-01 100.0% 76.5%
1j2jB00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.82 67.0 6.63e-01 97.4% 85.4%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.78 66.0 4.47e-01 100.0% 42.9%
3gr3A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.76 55.0 3.38e-01 100.0% 13.3%
5cwkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 64.0 4.14e-01 100.0% 22.6%
3gwlA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.73 60.0 4.44e-01 97.4% 47.2%
4wxjA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.72 53.0 3.85e-01 84.2% 28.7%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 57.0 4.18e-01 100.0% 30.9%
5hn9C00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.72 56.0 3.26e-01 92.1% 10.2%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 59.0 4.99e-01 97.4% 97.1%
3no6A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.70 53.0 3.44e-01 100.0% 16.2%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.70 55.0 3.84e-01 100.0% 24.8%
2h1jA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.70 58.0 3.21e-01 100.0% 6.7%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.69 52.0 3.88e-01 100.0% 29.9%
3ix7A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.67 54.0 3.84e-01 100.0% 51.1%
2wwwC01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 54.0 4.97e-01 97.4% 69.2%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.04e-01 100.0% 36.9%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 52.0 4.80e-01 97.4% 69.2%
3msuB03 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.61 47.0 3.51e-01 89.5% 35.5%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 46.0 3.87e-01 89.5% 58.2%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.55 43.0 2.80e-01 100.0% 22.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026839 130.1.2.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.89 78.0 4.92e-01 100.0% 20.5%
5006721 547.1.1.9 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › DUF5658 0.83 67.0 4.80e-01 100.0% 30.8%
3946399 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 68.0 4.65e-01 92.1% 26.9%
4129922 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.82 73.0 5.28e-01 100.0% 41.0%
4059065 622.1.1.1 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.82 72.0 5.26e-01 100.0% 38.4%
3183420 604.6.1.4 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GGA_N-GAT 0.81 70.0 6.23e-01 100.0% 78.2%
4975245 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 68.0 5.23e-01 100.0% 44.3%
3201365 604.6.1.4 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GGA_N-GAT 0.79 62.0 6.38e-01 89.5% 100.0%
3186565 601.1.1.149 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Tcp11 0.78 63.0 4.34e-01 100.0% 25.3%
3927675 2004.1.1.600 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 0.78 64.0 3.52e-01 94.7% 6.5%
3645380 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.69 55.0 3.51e-01 92.1% 18.4%
3810677 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.69 56.0 3.66e-01 94.7% 66.3%
3320047 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 49.0 3.35e-01 92.1% 20.0%