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SRR1747022_scaffold_43_prodigal-single.1__X__X__00073

Bact-Vir

SRR1747022_scaffold_43_prodigal-single.1__X__X__00073

Identity

Kingdom:
phage

Quality

95.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-41
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dbaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.69 56.0 3.78e-01 100.0% 91.2%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.67 54.0 4.89e-01 100.0% 65.5%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.63 49.0 4.01e-01 94.9% 44.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4420354 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.90 74.0 5.32e-01 100.0% 34.3%
5043702 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.78 66.0 4.85e-01 100.0% 35.5%
2055367 650.1.1.3 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › HsbA 0.72 54.0 4.70e-01 100.0% 51.4%
4142309 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.71 56.0 3.86e-01 100.0% 36.3%
3303368 109.4.1.37 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 0.64 49.0 2.93e-01 100.0% 10.3%
4011291 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 48.0 3.39e-01 94.9% 32.2%