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SRR1747022_scaffold_43_prodigal-single.1__X__X__00094
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00094
Identity
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-73
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5gm0A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 56.0 | 4.39e-01 | 97.3% | 37.2% |
| 4ym3C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 51.0 | 4.11e-01 | 90.4% | 36.4% |
| 3ap9A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 52.0 | 4.07e-01 | 94.5% | 35.1% |
| 5nldB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 55.0 | 4.43e-01 | 98.6% | 41.3% |
| 3dgtA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 64.0 | 4.25e-01 | 95.9% | 31.7% |
| 2wsuB02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 54.0 | 4.34e-01 | 100.0% | 41.7% |
| 2yyoA00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.68 | 54.0 | 4.18e-01 | 100.0% | 38.7% |
| 6kcvA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 58.0 | 4.08e-01 | 95.9% | 33.8% |
| 4qhzA00 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.61 | 52.0 | 3.64e-01 | 94.5% | 34.9% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 49.0 | 3.49e-01 | 97.3% | 93.0% |
| 4ywrA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 40.0 | 2.84e-01 | 74.0% | 34.6% |
| 7zqiA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 49.0 | 3.66e-01 | 95.9% | 64.0% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 50.0 | 3.89e-01 | 97.3% | 67.3% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 48.0 | 3.70e-01 | 97.3% | 63.5% |
| 1c16A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 48.0 | 3.70e-01 | 95.9% | 69.9% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 43.0 | 4.02e-01 | 98.6% | 67.8% |
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 4.15e-01 | 97.3% | 74.1% |
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 46.0 | 3.79e-01 | 94.5% | 99.2% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 32.0 | 3.34e-01 | 93.2% | 64.2% |
| 3cddA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.51 | 38.0 | 2.88e-01 | 80.8% | 90.8% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.51 | 39.0 | 2.96e-01 | 82.2% | 92.0% |
| 6ipaA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 34.0 | 2.71e-01 | 71.2% | 85.5% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 40.0 | 2.93e-01 | 93.2% | 88.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3995842 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.73 | 53.0 | 3.87e-01 | 97.3% | 28.9% |
| 5032518 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.69 | 48.0 | 4.39e-01 | 83.6% | 55.8% |
| 3701432 | 10.1.1.56 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C | 0.69 | 60.0 | 5.18e-01 | 100.0% | 62.7% |
| 3962291 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.69 | 59.0 | 4.52e-01 | 94.5% | 49.4% |
| 3901910 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.67 | 61.0 | 4.51e-01 | 100.0% | 42.2% |
| 3801721 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.63 | 53.0 | 4.91e-01 | 94.5% | 89.5% |
| 3541447 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.62 | 56.0 | 4.16e-01 | 100.0% | 40.0% |
| 4072360 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.62 | 51.0 | 3.70e-01 | 95.9% | 32.1% |
| 3585077 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.61 | 52.0 | 4.39e-01 | 93.2% | 57.5% |
| 3271259 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.61 | 38.0 | 3.61e-01 | 74.0% | 52.9% |
| 5021465 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 41.0 | 2.79e-01 | 72.6% | 28.0% |
| 4121556 | 3986.1.1.1 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain › LepA_C | 0.58 | 40.0 | 3.42e-01 | 71.2% | 100.0% |
| 5048982 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 48.0 | 3.53e-01 | 100.0% | 98.7% |
| 3039678 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.58 | 40.0 | 3.36e-01 | 72.6% | 68.2% |
| 3768259 | 233.1.1.5 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_2 | 0.58 | 50.0 | 3.74e-01 | 95.9% | 65.0% |
| 3917386 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.57 | 50.0 | 3.76e-01 | 95.9% | 64.6% |
| 3934135 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 49.0 | 4.15e-01 | 100.0% | 97.7% |
| 1582842 | 65.1.1.5 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › BAB2_0307-like_N | 0.57 | 38.0 | 4.13e-01 | 97.3% | 83.6% |
| 3907478 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.56 | 50.0 | 3.74e-01 | 97.3% | 64.4% |
| 4505130 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.56 | 49.0 | 4.16e-01 | 100.0% | 92.0% |
| 3838381 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.55 | 43.0 | 2.72e-01 | 82.2% | 56.3% |
| 3676562 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 40.0 | 2.89e-01 | 78.1% | 70.2% |
| 5011867 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.54 | 47.0 | 3.67e-01 | 100.0% | 96.4% |
| 4675336 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.53 | 47.0 | 4.09e-01 | 97.3% | 94.5% |
| 3989850 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.46e-01 | 76.7% | 55.0% |
| 3496171 | 330.1.1.10 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 | 0.53 | 40.0 | 3.74e-01 | 80.8% | 80.0% |
| 4167251 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.53 | 34.0 | 3.97e-01 | 95.9% | 98.0% |
| 5040575 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 45.0 | 3.90e-01 | 100.0% | 90.0% |
| 4314572 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.52 | 36.0 | 3.35e-01 | 74.0% | 61.0% |
| 3801806 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.52 | 45.0 | 3.87e-01 | 97.3% | 89.6% |
| 4228678 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.52 | 34.0 | 3.96e-01 | 93.2% | 100.0% |
| 3274369 | 11.1.1.837 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TAF2_3rd | 0.52 | 42.0 | 3.70e-01 | 93.2% | 100.0% |
| 4232558 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.51 | 35.0 | 3.25e-01 | 72.6% | 56.0% |
| 4089654 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.51 | 35.0 | 3.23e-01 | 74.0% | 61.0% |
| 4944011 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.51 | 42.0 | 3.99e-01 | 93.2% | 80.0% |