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SRR1747022_scaffold_43_prodigal-single.1__X__X__00103
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00103
Identity
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-52
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.71 | 48.0 | 5.04e-01 | 76.5% | 78.3% |
| 1jlcB03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.71 | 46.0 | 3.41e-01 | 70.6% | 25.6% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.70 | 49.0 | 3.52e-01 | 100.0% | 25.5% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 48.0 | 4.48e-01 | 100.0% | 58.7% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.69 | 39.0 | 3.10e-01 | 76.5% | 26.0% |
| 1c9rA04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.67 | 44.0 | 3.53e-01 | 94.1% | 32.7% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.63 | 50.0 | 5.16e-01 | 100.0% | 95.8% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.63 | 45.0 | 4.06e-01 | 98.0% | 54.9% |
| 1mbyA00 | 2.40.50.930 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 38.0 | 3.44e-01 | 70.6% | 42.7% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 51.0 | 3.06e-01 | 96.1% | 21.8% |
| 5cxdB01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.60 | 34.0 | 2.62e-01 | 76.5% | 20.8% |
| 1jv2B04 | 4.10.1240.30 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.59 | 42.0 | 3.57e-01 | 100.0% | 45.3% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 39.0 | 3.83e-01 | 84.3% | 65.5% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 46.0 | 3.45e-01 | 96.1% | 90.1% |
| 3ugfB02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.56 | 48.0 | 3.38e-01 | 100.0% | 49.7% |
| 6x6aA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 43.0 | 2.81e-01 | 90.2% | 32.4% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 41.0 | 3.41e-01 | 82.4% | 43.9% |
| 4dy0B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.56 | 45.0 | 3.45e-01 | 94.1% | 49.2% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 46.0 | 4.19e-01 | 94.1% | 72.9% |
| 5ncsA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 49.0 | 3.57e-01 | 100.0% | 64.0% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.55 | 41.0 | 3.17e-01 | 94.1% | 34.1% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.55 | 45.0 | 3.97e-01 | 100.0% | 61.0% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 47.0 | 3.50e-01 | 100.0% | 35.2% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.55 | 43.0 | 3.82e-01 | 100.0% | 57.0% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 48.0 | 3.52e-01 | 100.0% | 85.9% |
| 3vhxF00 | 2.60.40.4330 | Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain | 0.54 | 46.0 | 3.77e-01 | 100.0% | 78.4% |
| 4ifdE00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.54 | 41.0 | 2.70e-01 | 86.3% | 50.6% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 44.0 | 3.72e-01 | 92.2% | 55.7% |
| 4ns4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 44.0 | 2.85e-01 | 100.0% | 26.2% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 45.0 | 2.91e-01 | 100.0% | 20.8% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 43.0 | 3.84e-01 | 98.0% | 62.7% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 44.0 | 3.21e-01 | 98.0% | 53.2% |
| 3bwxA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 42.0 | 2.69e-01 | 96.1% | 24.2% |
| 5l8sA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 2.68e-01 | 90.2% | 40.1% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 44.0 | 3.88e-01 | 98.0% | 64.1% |
| 6nobA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 45.0 | 2.68e-01 | 100.0% | 19.6% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 44.0 | 2.82e-01 | 100.0% | 42.4% |
| 3azoA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 37.0 | 2.42e-01 | 86.3% | 28.6% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3235213 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.72 | 59.0 | 4.49e-01 | 100.0% | 37.7% |
| 3832861 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.70 | 56.0 | 3.34e-01 | 88.2% | 32.4% |
| 3964724 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.69 | 44.0 | 3.10e-01 | 88.2% | 21.9% |
| 3964928 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.68 | 50.0 | 4.20e-01 | 100.0% | 47.1% |
| 3415548 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.67 | 46.0 | 3.85e-01 | 100.0% | 41.1% |
| 4343392 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.66 | 57.0 | 4.41e-01 | 100.0% | 44.5% |
| 3247407 | 220.1.1.50 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 | 0.64 | 55.0 | 4.20e-01 | 100.0% | 42.4% |
| 3904452 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.64 | 55.0 | 4.29e-01 | 100.0% | 47.0% |
| 3199319 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.64 | 36.0 | 2.11e-01 | 98.0% | 5.6% |
| 5004469 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.63 | 53.0 | 3.62e-01 | 98.0% | 39.0% |
| 3875849 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.63 | 53.0 | 3.25e-01 | 100.0% | 86.7% |
| 4001894 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.63 | 47.0 | 2.59e-01 | 82.4% | 54.8% |
| 3774919 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.62 | 51.0 | 3.02e-01 | 92.2% | 19.6% |
| 3996165 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.62 | 52.0 | 3.24e-01 | 94.1% | 25.2% |
| 3789199 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.61 | 50.0 | 4.00e-01 | 98.0% | 100.0% |
| 3402051 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.61 | 35.0 | 3.08e-01 | 100.0% | 33.3% |
| 3741657 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.60 | 49.0 | 3.92e-01 | 100.0% | 43.5% |
| 3701911 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.59 | 50.0 | 3.35e-01 | 100.0% | 32.3% |
| 3389942 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.59 | 45.0 | 3.73e-01 | 100.0% | 46.7% |
| 3940690 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 47.0 | 3.85e-01 | 94.1% | 88.6% |
| 3435721 | 5.3.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop | 0.59 | 39.0 | 3.34e-01 | 100.0% | 37.9% |
| 3608162 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.58 | 47.0 | 3.46e-01 | 100.0% | 53.3% |
| 3914648 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 36.0 | 2.38e-01 | 76.5% | 13.2% |
| 3482374 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 45.0 | 2.95e-01 | 100.0% | 17.5% |
| 4421418 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.57 | 50.0 | 3.88e-01 | 100.0% | 46.1% |
| 3781077 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.57 | 44.0 | 3.67e-01 | 92.2% | 84.5% |
| 3703231 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.57 | 45.0 | 3.37e-01 | 100.0% | 52.7% |
| 4115704 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.56 | 44.0 | 3.94e-01 | 100.0% | 60.0% |
| 3742045 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.56 | 45.0 | 3.54e-01 | 100.0% | 38.5% |
| 3327993 | 5.1.4.156 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 | 0.56 | 46.0 | 2.93e-01 | 100.0% | 48.7% |
| 4948087 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 3.00e-01 | 78.4% | 70.0% |
| 3639482 | 220.1.1.211 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 | 0.55 | 49.0 | 3.55e-01 | 100.0% | 45.7% |
| 2099294 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.55 | 48.0 | 3.52e-01 | 100.0% | 85.9% |
| 4018214 | 1062.1.1.1 ↗ | a+b three layers › Cryptic loci regulator 2 N-terminal domain › Cryptic loci regulator 2 N-terminal domain › Cryptic loci regulator 2 N-terminal domain › Clr2_transil | 0.55 | 45.0 | 3.30e-01 | 94.1% | 74.2% |
| 4054729 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.55 | 42.0 | 3.77e-01 | 100.0% | 58.7% |
| 4944389 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 44.0 | 4.09e-01 | 90.2% | 86.2% |
| 3535752 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.40e-01 | 100.0% | 37.1% |
| 3311509 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 40.0 | 2.23e-01 | 84.3% | 29.8% |
| 3690375 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.54 | 45.0 | 3.37e-01 | 98.0% | 58.6% |
| 3496506 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.54 | 36.0 | 2.23e-01 | 72.5% | 75.9% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.54 | 42.0 | 3.96e-01 | 100.0% | 70.8% |
| 5050697 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.53 | 45.0 | 4.62e-01 | 100.0% | 98.0% |
| 3786814 | 5.1.2.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BMT | 0.53 | 43.0 | 2.59e-01 | 98.0% | 60.9% |
| 5040652 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.51 | 41.0 | 2.86e-01 | 96.1% | 50.3% |
| 4785457 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.51 | 35.0 | 2.22e-01 | 74.5% | 96.3% |