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SRR1747022_scaffold_43_prodigal-single.1__X__X__00123

Bact-Vir

SRR1747022_scaffold_43_prodigal-single.1__X__X__00123

Identity

Kingdom:
phage

Quality

81.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-77
PDB
Domain cluster: rep: OP172755.1__WAX11326.1__CB473P1_00039__00039__D159-232
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.73 54.0 4.99e-01 97.4% 62.1%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 50.0 4.65e-01 88.3% 65.3%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 39.0 3.35e-01 100.0% 38.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 46.0 4.41e-01 88.3% 66.7%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 34.0 3.19e-01 84.4% 40.9%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 39.0 3.38e-01 100.0% 39.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 29.0 3.54e-01 84.4% 66.7%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.62 44.0 4.90e-01 94.8% 93.4%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.62 28.0 3.35e-01 80.5% 60.8%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.61 39.0 3.36e-01 100.0% 39.8%
3gasA01 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.60 31.0 3.15e-01 75.3% 45.6%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.64e-01 88.3% 50.9%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 30.0 3.60e-01 84.4% 78.7%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.55 46.0 3.76e-01 89.6% 95.0%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.55 32.0 3.87e-01 84.4% 97.8%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 30.0 3.36e-01 88.3% 72.2%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.34e-01 100.0% 81.4%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 33.0 3.56e-01 92.2% 71.6%
3a5pA00 2.60.200.70 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 37.0 3.34e-01 83.1% 54.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 32.0 3.46e-01 76.6% 75.8%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 38.0 2.72e-01 80.5% 95.4%
2v5oA05 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 44.0 3.69e-01 100.0% 77.9%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 45.0 4.00e-01 100.0% 78.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 46.0 5.64e-01 84.4% 94.0%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.70 52.0 5.64e-01 97.4% 92.3%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.61 43.0 4.54e-01 100.0% 85.1%
5060461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 4.42e-01 89.6% 78.7%
3623434 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.59 48.0 4.03e-01 88.3% 56.2%
3908519 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 49.0 4.20e-01 100.0% 66.4%
3708596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.92e-01 88.3% 71.8%
3398379 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 49.0 4.22e-01 100.0% 77.5%
5049906 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 30.0 3.30e-01 70.1% 65.0%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 32.0 3.35e-01 75.3% 62.9%
3430041 5.1.10.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.53 36.0 3.27e-01 81.8% 51.4%
3414375 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.72e-01 93.5% 78.1%
3555102 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 45.0 3.97e-01 100.0% 85.8%
3633079 220.1.1.194 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2nd_LRR 0.52 44.0 3.52e-01 100.0% 68.2%
3264377 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 42.0 3.76e-01 97.4% 85.8%
3224319 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.50 38.0 4.01e-01 90.9% 88.6%