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SRR1747022_scaffold_43_prodigal-single.1__X__X__00141
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00141
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-75
Domain cluster:
rep: AY682195.1__AAV35876.1__orf56__00056__D75-123
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.89 | 75.0 | 6.83e-01 | 100.0% | 70.6% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 42.0 | 3.58e-01 | 100.0% | 41.9% |
| 2ff4A03 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.63 | 54.0 | 4.51e-01 | 100.0% | 92.9% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 39.0 | 3.14e-01 | 100.0% | 33.3% |
| 2bc0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 47.0 | 3.13e-01 | 88.7% | 71.0% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 51.0 | 5.13e-01 | 100.0% | 100.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 38.0 | 3.74e-01 | 100.0% | 59.0% |
| 4ba0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 36.0 | 3.71e-01 | 98.1% | 66.7% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 32.0 | 3.36e-01 | 96.2% | 66.7% |
| 2khoA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 39.0 | 2.96e-01 | 88.7% | 89.3% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.51 | 40.0 | 3.64e-01 | 100.0% | 92.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4519945 | 101.1.14.4 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 | 0.84 | 79.0 | 7.93e-01 | 100.0% | 98.1% |
| 3886999 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.65 | 43.0 | 4.76e-01 | 98.1% | 90.0% |
| 4961283 | 101.1.2.935 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C | 0.65 | 51.0 | 4.12e-01 | 88.7% | 77.1% |
| 3573611 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 33.0 | 4.27e-01 | 100.0% | 100.0% |
| 3956578 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.60 | 52.0 | 3.62e-01 | 100.0% | 32.3% |
| 3617484 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 39.0 | 3.87e-01 | 100.0% | 63.6% |
| 3708288 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 33.0 | 3.94e-01 | 100.0% | 85.7% |
| 3454962 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.59 | 37.0 | 3.77e-01 | 100.0% | 66.0% |
| 3245932 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 41.0 | 4.37e-01 | 100.0% | 88.9% |
| 4948028 | 284.1.1.32 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP26_IF | 0.57 | 46.0 | 3.89e-01 | 100.0% | 88.6% |
| 3276203 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.56 | 45.0 | 3.47e-01 | 88.7% | 74.6% |
| 3223367 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 46.0 | 4.42e-01 | 100.0% | 92.3% |
| 4967657 | 375.1.1.325 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC | 0.55 | 35.0 | 3.77e-01 | 100.0% | 77.8% |
| 3937186 | 221.4.1.21 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › PF30669 | 0.54 | 44.0 | 2.79e-01 | 92.5% | 53.9% |
| 4600774 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 45.0 | 4.51e-01 | 100.0% | 96.4% |
| 3446806 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.51 | 39.0 | 3.60e-01 | 98.1% | 98.8% |
| 4268554 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.51 | 42.0 | 3.79e-01 | 100.0% | 77.5% |