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SRR1747022_scaffold_43_prodigal-single.1__X__X__00151
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00151
Identity
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-105
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 60.0 | 4.98e-01 | 100.0% | 61.8% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 4.34e-01 | 100.0% | 52.8% |
| 1ms9A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.64 | 39.0 | 2.45e-01 | 100.0% | 12.2% |
| 3htnB00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.59 | 53.0 | 4.28e-01 | 100.0% | 64.7% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 37.0 | 4.06e-01 | 98.6% | 82.1% |
| 2gaiA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.59 | 47.0 | 4.01e-01 | 89.0% | 55.3% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.58 | 50.0 | 4.30e-01 | 95.9% | 96.5% |
| 3hwuA00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.57 | 50.0 | 4.04e-01 | 100.0% | 65.3% |
| 7rlrA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 44.0 | 3.10e-01 | 86.3% | 95.9% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.56 | 45.0 | 3.16e-01 | 91.8% | 50.6% |
| 2db9A01 | 3.90.70.200 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain | 0.55 | 47.0 | 3.84e-01 | 100.0% | 51.1% |
| 1ez4A02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.54 | 34.0 | 2.70e-01 | 89.0% | 28.5% |
| 2ooiA01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.54 | 44.0 | 3.66e-01 | 100.0% | 90.9% |
| 3moiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 41.0 | 3.06e-01 | 84.9% | 52.4% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 45.0 | 3.26e-01 | 100.0% | 34.6% |
| 1v9xA00 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.53 | 37.0 | 3.35e-01 | 90.4% | 49.1% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.53 | 47.0 | 3.59e-01 | 100.0% | 42.0% |
| 2bi0A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 45.0 | 3.64e-01 | 100.0% | 96.1% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 34.0 | 3.02e-01 | 100.0% | 43.4% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 33.0 | 2.96e-01 | 100.0% | 42.5% |
| 6p3qA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 45.0 | 3.54e-01 | 100.0% | 70.3% |
| 3s9xA00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.51 | 38.0 | 3.09e-01 | 83.6% | 83.0% |
| 3lh4A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 45.0 | 3.90e-01 | 100.0% | 71.3% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.51 | 41.0 | 3.66e-01 | 87.7% | 70.6% |
| 6r8gB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.50 | 31.0 | 2.45e-01 | 87.7% | 26.5% |
| 1wnhA02 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 43.0 | 3.70e-01 | 100.0% | 60.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1144815 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.82 | 67.0 | 6.50e-01 | 100.0% | 80.0% |
| 3409335 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.73 | 67.0 | 4.79e-01 | 100.0% | 39.0% |
| 3723834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 56.0 | 5.78e-01 | 100.0% | 88.6% |
| 3691144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.71 | 56.0 | 5.76e-01 | 100.0% | 88.6% |
| 3991065 | 4.1.1.334 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 | 0.71 | 60.0 | 5.84e-01 | 95.9% | 83.7% |
| 5022323 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 52.0 | 5.47e-01 | 100.0% | 95.4% |
| 1233328 | 4.1.1.116 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_14 | 0.67 | 60.0 | 4.94e-01 | 100.0% | 62.3% |
| 5043613 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.66 | 49.0 | 4.11e-01 | 79.5% | 76.8% |
| 3659030 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.65 | 59.0 | 4.50e-01 | 100.0% | 88.1% |
| 3717251 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 45.0 | 5.03e-01 | 95.9% | 96.4% |
| 4335022 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 50.0 | 4.62e-01 | 95.9% | 65.3% |
| 3271375 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 50.0 | 3.69e-01 | 84.9% | 83.3% |
| 3869065 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 49.0 | 4.39e-01 | 95.9% | 62.0% |
| 3183093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 54.0 | 4.33e-01 | 100.0% | 50.0% |
| 3253266 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 4.25e-01 | 100.0% | 59.0% |
| 3811908 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.61 | 54.0 | 4.39e-01 | 100.0% | 69.3% |
| 3741555 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.60 | 43.0 | 2.98e-01 | 78.1% | 23.5% |
| 3997614 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 40.0 | 3.43e-01 | 74.0% | 42.5% |
| 3800763 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.59 | 40.0 | 2.67e-01 | 74.0% | 18.5% |
| 4013325 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.59 | 52.0 | 4.35e-01 | 100.0% | 57.6% |
| None | — | 0.59 | 50.0 | 2.86e-01 | 98.6% | 32.5% | |
| 3290744 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.59 | 41.0 | 3.48e-01 | 72.6% | 48.3% |
| 3317450 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 44.0 | 3.77e-01 | 79.5% | 58.2% |
| 3406575 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.57 | 50.0 | 3.15e-01 | 100.0% | 30.7% |
| 3232364 | 3335.1.1.0 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B | 0.57 | 43.0 | 4.52e-01 | 100.0% | 92.3% |
| 3422852 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.55 | 48.0 | 3.98e-01 | 95.9% | 68.8% |
| 3460111 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.55 | 41.0 | 2.76e-01 | 84.9% | 50.0% |
| 3824181 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.55 | 36.0 | 3.87e-01 | 98.6% | 83.3% |
| 3718119 | 2004.1.1.348 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B | 0.54 | 36.0 | 2.75e-01 | 100.0% | 28.8% |
| 4931409 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 46.0 | 3.82e-01 | 94.5% | 59.2% |
| 3347865 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.54 | 49.0 | 4.12e-01 | 100.0% | 71.7% |
| 3965853 | 222.1.1.22 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ApeP-like | 0.54 | 47.0 | 3.87e-01 | 100.0% | 85.9% |
| 3475222 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 2.85e-01 | 100.0% | 26.1% |
| 3784710 | 5.1.5.213 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 | 0.53 | 48.0 | 2.90e-01 | 100.0% | 22.1% |
| 3399910 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.53 | 47.0 | 2.93e-01 | 100.0% | 33.4% |
| 5011932 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.52 | 44.0 | 3.87e-01 | 100.0% | 63.8% |
| 3561487 | 223.1.1.108 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 | 0.52 | 44.0 | 2.72e-01 | 100.0% | 71.7% |
| 3920558 | 223.1.1.146 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, VGCC_alpha2, PF30670 | 0.51 | 43.0 | 2.62e-01 | 100.0% | 75.5% |
| 4970369 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.50 | 35.0 | 3.58e-01 | 98.6% | 75.7% |